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Revision 1.61 - (hide annotations) (download)
Wed Dec 14 05:12:19 2005 UTC (18 years, 5 months ago) by dimitri
Branch: MAIN
Changes since 1.60: +44 -13 lines 
Updated high_res_cube/input/data_hr for checkpoints >= checkpoint57t_post
216-CPU code and input used for integrating cube27.
1 dimitri 1.59 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.61 Date last updated: December 13, 2005
3     216-CPU code and input used for integrating cube27.
4 dimitri 1.8
5    
6     ##########################################################################
7     ##########################################################################
8 dimitri 1.14 # getting the code from anonymous CVS server
9 dimitri 1.1
10 dimitri 1.38 cvs co MITgcm_contrib/high_res_cube/README_ice
11     cvs co MITgcm_contrib/high_res_cube/code-mods
12     cvs co MITgcm_contrib/high_res_cube/input
13     cvs co MITgcm_contrib/high_res_cube/results
14 dimitri 1.43 cvs co MITgcm_code
15     cvs co MITgcm/verification/global_ocean.cs32x15
16 dimitri 1.14
17    
18     ##########################################################################
19     ##########################################################################
20     # 32*32*6*15, 1-cpu cube sphere
21 dimitri 1.3
22 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
23 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
24 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
25 dimitri 1.37 cd ../build
26     \rm *
27     ../../../tools/genmake2 -mods=../code
28     make depend
29     make
30     cd ..
31     mkdir run
32     cd run
33     \rm *
34     \cp ../input/* .
35     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
36     ../build/mitgcmuv >& output.txt
37 dimitri 1.3
38 dimitri 1.37 comparison output is in:
39     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
40    
41     to use matlab to look at the output
42     matlab
43    
44 dimitri 1.55 for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
45     'QNETtave','FVtave','FUtave','EmPmRtave'}
46 dimitri 1.37 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
47     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
48     end
49    
50 dimitri 1.55 heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
51 dimitri 1.37 mask=0*heff; mask(find(heff>.001))=1;
52 dimitri 1.55 uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
53     vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
54 dimitri 1.37 clf
55 dimitri 1.55 subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
56     subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
57     subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
58     subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
59 dimitri 1.37
60    
61     ##########################################################################
62     ##########################################################################
63     # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
64    
65     cd MITgcm/verification/global_ocean.cs32x15/code
66     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
67     \cp ../code_alt/code.176t_8x4/* .
68 dimitri 1.25 cd ../build
69 dimitri 1.37 \rm *
70 dimitri 1.10 ../../../tools/genmake2 -mods=../code
71 dimitri 1.1 make depend
72     make
73     cd ..
74     mkdir run
75     cd run
76 dimitri 1.37 \rm *
77 dimitri 1.8 \cp ../input/* .
78     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79 dimitri 1.3 ../build/mitgcmuv >& output.txt
80    
81 dimitri 1.8
82     ##########################################################################
83     ##########################################################################
84 dimitri 1.56 # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
85 dimitri 1.8
86     cd MITgcm/verification/global_ocean.cs32x15/code
87     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
88 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
89 dimitri 1.8 \cp SIZE.h_mpi SIZE.h
90    
91 dimitri 1.25 cd ../build
92 dimitri 1.14 \rm *
93 dimitri 1.54 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
94 dimitri 1.8 make depend
95 dimitri 1.41 make -j
96 dimitri 1.8
97     cd ..
98     mkdir run
99     cd run
100 dimitri 1.14 \rm *
101 dimitri 1.8 \cp ../input/* .
102     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
103     mpirun -np 2 ../build/mitgcmuv
104    
105    
106     ##########################################################################
107     ##########################################################################
108 dimitri 1.35 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
109 dimitri 1.36 # starting with pickup file from end of 1992
110 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
111    
112     cd MITgcm/verification/global_ocean.cs32x15/code
113     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
114     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
115     \cp packages.conf_hr packages.conf
116    
117     cd ../build
118     \rm *
119 dimitri 1.40 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
120 dimitri 1.35 make depend
121 dimitri 1.41 make -j
122 dimitri 1.35
123     cd ..
124     mkdir run
125     cd run
126     \rm *
127     \cp ../input/* .
128     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
129 dimitri 1.41 qsub job_altix92_54t
130 dimitri 1.35
131    
132     ##########################################################################
133     ##########################################################################
134 dimitri 1.52 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
135 dimitri 1.23 # requires input files in sudirectories run_template and ncep_rgau
136 dimitri 1.41 # these can be obained from lou:/u/menemenl/cube
137 dimitri 1.23
138     cd MITgcm/verification/global_ocean.cs32x15/code
139     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
140 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
141     \cp SIZE.h_216 SIZE.h
142 dimitri 1.23 \cp packages.conf_hr packages.conf
143 dimitri 1.8
144 dimitri 1.25 cd ../build
145 dimitri 1.14 \rm *
146 dimitri 1.46 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
147 dimitri 1.8 make depend
148 dimitri 1.52 make -j
149 dimitri 1.8
150     cd ..
151     mkdir run
152     cd run
153 dimitri 1.14 \rm *
154 dimitri 1.8 \cp ../input/* .
155     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
156 dimitri 1.44 ln -sf ../../../../run_template/* .
157 dimitri 1.50 \rm pickup*
158 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000000216.cube27 pickup.0000000216
159     ln -sf ../../../../run_template/pickup_seaice.0000000216.cube27 pickup_seaice.0000000216
160 dimitri 1.44 \cp ../build/mitgcmuv .
161 dimitri 1.57 qsub job_altix
162 dimitri 1.41
163 dimitri 1.61
164 dimitri 1.58 ##########################################################################
165     ##########################################################################
166     # 510*510*6*50, 1500-tile, 150-cpu, excludes land
167     # uses s1500t_17x51 configuration
168    
169     cd MITgcm/verification/global_ocean.cs32x15/code
170     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
171     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
172     \cp SIZE.h_150 SIZE.h
173     \cp packages.conf_hr packages.conf
174    
175     cd ../build
176     \rm *
177     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
178     make depend
179     make -j
180    
181     cd ..
182     mkdir run
183     cd run
184     \rm *
185     \cp ../input/* .
186     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
187     ln -sf ../../../../run_template/* .
188     \rm pickup*
189 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
190     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
191 dimitri 1.58 \cp ../build/mitgcmuv mitgcmuv150
192     qsub job_altix150
193    
194    
195    
196    
197 dimitri 1.61 ##########################################################################
198     ##########################################################################
199     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
200     # uses s1500t_17x51 configuration
201     # example for running on c17-c20 using arrayd
202    
203     cd MITgcm/verification/global_ocean.cs32x15/code
204     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
205     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
206     \cp SIZE.h_375 SIZE.h
207     \cp packages.conf_hr packages.conf
208    
209     cd ../build
210     \rm *
211     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
212     make depend
213     make -j
214    
215     cd ..
216     mkdir run
217     cd run
218     \rm *
219     \cp ../input/* .
220     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
221     ln -sf ../../../../run_template/* .
222     \rm pickup*
223     ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
224     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
225     \cp ../build/mitgcmuv .
226     job_c20_375cpu < /dev/null >&! output.run &
227    
228 dimitri 1.58
229    
230    
231    
232    
233    
234    
235    
236    
237    
238 dimitri 1.41
239 dimitri 1.56 ##########################################################################
240     ##########################################################################
241     # 510*510*6*50, 1500-tile, 375-cpu, excludes land
242     # uses s1500t_17x51 configuration
243     # example for running on c17-c20 using arrayd
244    
245     cd MITgcm/verification/global_ocean.cs32x15/code
246     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
247     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
248     \cp SIZE.h_375 SIZE.h
249     \cp packages.conf_hr packages.conf
250    
251     cd ../build
252     \rm *
253     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
254     make depend
255     make -j
256    
257     cd ..
258     mkdir run
259     cd run
260     \rm *
261     \cp ../input/* .
262     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
263     ln -sf ../../../../run_template/* .
264     \rm pickup*
265 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
266     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
267 dimitri 1.56 \cp ../build/mitgcmuv .
268 dimitri 1.57 job_c20_375cpu < /dev/null >&! output.run &
269    
270    
271     ##########################################################################
272     ##########################################################################
273     # 510*510*6*50, 1500-tile, 500-cpu, excludes land
274     # uses s1500t_17x51 configuration
275     # example for running on c17-c20 using arrayd
276    
277     cd MITgcm/verification/global_ocean.cs32x15/code
278     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
279     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
280     \cp SIZE.h_500 SIZE.h
281     \cp packages.conf_hr packages.conf
282    
283     cd ../build
284     \rm *
285     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
286     make depend
287     make -j
288    
289     cd ..
290     mkdir run
291     cd run
292     \rm *
293     \cp ../input/* .
294     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
295     ln -sf ../../../../run_template/* .
296     \rm pickup*
297 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
298     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
299 dimitri 1.57 \cp ../build/mitgcmuv .
300     job_c19_500cpu < /dev/null >&! output.run &
301 dimitri 1.56
302    
303    
304 dimitri 1.41
305    
306 dimitri 1.60 ##########################################################################
307     ##########################################################################
308     # 510*510*6*50, 216-cpu cube sphere on cosmos
309    
310     cd MITgcm/verification/global_ocean.cs32x15/code
311     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
312     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
313     \cp SIZE.h_216 SIZE.h
314     \cp packages.conf_hr packages.conf
315    
316     module unload latest_intel80
317     module unload mpich-gm-intel80
318     module load latest_intel81
319     module load mpich-gm-intel81
320    
321     cd ../build
322     \rm *
323     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
324     make depend
325     make -j
326    
327     cd ..
328     mkdir run
329     cd run
330     \rm *
331     \cp ../input/* .
332     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
333     ln -sf ../../../../run_template/* .
334     \rm pickup*
335 dimitri 1.61 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
336     ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
337 dimitri 1.60 \cp ../build/mitgcmuv .
338     bsub < job_cosmos
339    
340 dimitri 1.41
341    
342 dimitri 1.51
343    
344    
345    
346    
347 dimitri 1.41
348    
349    
350    
351    
352    
353    
354    
355    
356    
357    
358    
359 dimitri 1.42 ##########################################################################
360     ##########################################################################
361     # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
362     # requires input files in sudirectories run_template and ncep_rgau
363     # presently residing under orion:/tmp1/dmenem/cube
364 dimitri 1.41
365 dimitri 1.42 cd MITgcm/verification/global_ocean.cs32x15/code
366     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
367     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
368     \cp SIZE.h_54 SIZE.h
369     \cp packages.conf_hr packages.conf
370 dimitri 1.41
371 dimitri 1.42 cd ../build
372     \rm *
373     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
374     make depend
375     make -j
376 dimitri 1.41
377 dimitri 1.42 cd ..
378     mkdir run
379     cd run
380     \rm *
381     \cp ../input/* .
382     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
383     qsub job_orion
384 dimitri 1.35
385    
386     ##########################################################################
387     ##########################################################################
388 dimitri 1.41 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
389 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
390     # presently residing under orion:/tmp1/dmenem/cube
391    
392     cd MITgcm/verification/global_ocean.cs32x15/code
393     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
394 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
395     \cp SIZE.h_41 SIZE.h
396 dimitri 1.35 \cp packages.conf_hr packages.conf
397    
398     cd ../build
399     \rm *
400 dimitri 1.41 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
401 dimitri 1.35 make depend
402 dimitri 1.41 make -j
403 dimitri 1.35
404     cd ..
405     mkdir run
406     cd run
407     \rm *
408     \cp ../input/* .
409     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
410 dimitri 1.41 qsub job_orion41
411 dimitri 1.9
412    
413     ##########################################################################
414     ##########################################################################
415 dimitri 1.41 # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
416 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
417 dimitri 1.41 # presently residing under orion:/tmp1/dmenem/cube
418 dimitri 1.9
419     cd MITgcm/verification/global_ocean.cs32x15/code
420     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
421 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
422     \cp SIZE.h_50 SIZE.h
423 dimitri 1.12 \cp packages.conf_hr packages.conf
424 dimitri 1.9
425 dimitri 1.25 cd ../build
426 dimitri 1.15 \rm *
427 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
428 dimitri 1.9 make depend
429 dimitri 1.41 make -j
430 dimitri 1.9
431     cd ..
432     mkdir run
433     cd run
434 dimitri 1.15 \rm *
435     \cp ../input/* .
436     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
437 dimitri 1.41 qsub job_orion
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