Annotation of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.
Date last updated: February 17, 2005
Code and input used for integrating cube22.


##########################################################################
##########################################################################
# getting the code from anonymous CVS server

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/testreport


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
         'QNETtave','FVtave','FUtave','EmPmRtave'}
    tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
# requires input files in sudirectories run_template and ncep_rgau
# these can be obained from lou:/u/menemenl/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
\cp ../build/mitgcmuv .
qsub job_altix

##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	dimitri	1.59	Instructions for setting up a cube-sphere integration with sea-ice.
2	dimitri	1.52	Date last updated: February 17, 2005
3			Code and input used for integrating cube22.
4	dimitri	1.8
5
6			##########################################################################
7			##########################################################################
8	dimitri	1.14	# getting the code from anonymous CVS server
9	dimitri	1.1
10	dimitri	1.38	cvs co MITgcm_contrib/high_res_cube/README_ice
11			cvs co MITgcm_contrib/high_res_cube/code-mods
12			cvs co MITgcm_contrib/high_res_cube/input
13			cvs co MITgcm_contrib/high_res_cube/results
14	dimitri	1.43	cvs co MITgcm_code
15			cvs co MITgcm/verification/global_ocean.cs32x15
16			cvs co MITgcm/verification/testreport
17	dimitri	1.14
18
19			##########################################################################
20			##########################################################################
21			# 32326*15, 1-cpu cube sphere
22	dimitri	1.3
23	dimitri	1.1	cd MITgcm/verification/global_ocean.cs32x15/code
24	dimitri	1.8	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
25	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
26	dimitri	1.37	cd ../build
27			\rm *
28			../../../tools/genmake2 -mods=../code
29			make depend
30			make
31			cd ..
32			mkdir run
33			cd run
34			\rm *
35			\cp ../input/* .
36			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
37			../build/mitgcmuv >& output.txt
38	dimitri	1.3
39	dimitri	1.37	comparison output is in:
40			../../../../MITgcm_contrib/high_res_cube/results/output.txt
41
42			to use matlab to look at the output
43			matlab
44
45	dimitri	1.55	for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
46			'QNETtave','FVtave','FUtave','EmPmRtave'}
47	dimitri	1.37	tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48			cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49			end
50
51	dimitri	1.55	heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
52	dimitri	1.37	mask=0*heff; mask(find(heff>.001))=1;
53	dimitri	1.55	uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
54			vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
55	dimitri	1.37	clf
56	dimitri	1.55	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
57			subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
58			subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
59			subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
60	dimitri	1.37
61
62			##########################################################################
63			##########################################################################
64			# 32326*15, 17-tile, 1-cpu cube sphere experiment
65
66			cd MITgcm/verification/global_ocean.cs32x15/code
67			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68			\cp ../code_alt/code.176t_8x4/* .
69	dimitri	1.25	cd ../build
70	dimitri	1.37	\rm *
71	dimitri	1.10	../../../tools/genmake2 -mods=../code
72	dimitri	1.1	make depend
73			make
74			cd ..
75			mkdir run
76			cd run
77	dimitri	1.37	\rm *
78	dimitri	1.8	\cp ../input/* .
79			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
80	dimitri	1.3	../build/mitgcmuv >& output.txt
81
82	dimitri	1.8
83			##########################################################################
84			##########################################################################
85	dimitri	1.56	# 32326*15, 2-cpu cube sphere on the altices with ifort
86	dimitri	1.8
87			cd MITgcm/verification/global_ocean.cs32x15/code
88			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
89	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
90	dimitri	1.8	\cp SIZE.h_mpi SIZE.h
91
92	dimitri	1.25	cd ../build
93	dimitri	1.14	\rm *
94	dimitri	1.54	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
95	dimitri	1.8	make depend
96	dimitri	1.41	make -j
97	dimitri	1.8
98			cd ..
99			mkdir run
100			cd run
101	dimitri	1.14	\rm *
102	dimitri	1.8	\cp ../input/* .
103			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
104			mpirun -np 2 ../build/mitgcmuv
105
106
107			##########################################################################
108			##########################################################################
109	dimitri	1.35	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
110	dimitri	1.36	# starting with pickup file from end of 1992
111	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
112
113			cd MITgcm/verification/global_ocean.cs32x15/code
114			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
115			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
116			\cp packages.conf_hr packages.conf
117
118			cd ../build
119			\rm *
120	dimitri	1.40	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
121	dimitri	1.35	make depend
122	dimitri	1.41	make -j
123	dimitri	1.35
124			cd ..
125			mkdir run
126			cd run
127			\rm *
128			\cp ../input/* .
129			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
130	dimitri	1.41	qsub job_altix92_54t
131	dimitri	1.35
132
133			##########################################################################
134			##########################################################################
135	dimitri	1.52	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
136	dimitri	1.23	# requires input files in sudirectories run_template and ncep_rgau
137	dimitri	1.41	# these can be obained from lou:/u/menemenl/cube
138	dimitri	1.23
139			cd MITgcm/verification/global_ocean.cs32x15/code
140			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
141	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
142			\cp SIZE.h_216 SIZE.h
143	dimitri	1.23	\cp packages.conf_hr packages.conf
144	dimitri	1.8
145	dimitri	1.25	cd ../build
146	dimitri	1.14	\rm *
147	dimitri	1.46	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
148	dimitri	1.8	make depend
149	dimitri	1.52	make -j
150	dimitri	1.8
151			cd ..
152			mkdir run
153			cd run
154	dimitri	1.14	\rm *
155	dimitri	1.8	\cp ../input/* .
156			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
157	dimitri	1.44	ln -sf ../../../../run_template/* .
158	dimitri	1.50	\rm pickup*
159	dimitri	1.53	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
160			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
161	dimitri	1.44	\cp ../build/mitgcmuv .
162	dimitri	1.57	qsub job_altix
163	dimitri	1.41
164	dimitri	1.58	##########################################################################
165			##########################################################################
166			# 5105106*50, 1500-tile, 150-cpu, excludes land
167			# uses s1500t_17x51 configuration
168
169			cd MITgcm/verification/global_ocean.cs32x15/code
170			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
171			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
172			\cp SIZE.h_150 SIZE.h
173			\cp packages.conf_hr packages.conf
174
175			cd ../build
176			\rm *
177			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
178			make depend
179			make -j
180
181			cd ..
182			mkdir run
183			cd run
184			\rm *
185			\cp ../input/* .
186			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
187			ln -sf ../../../../run_template/* .
188			\rm pickup*
189			ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
190			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
191			\cp ../build/mitgcmuv mitgcmuv150
192			qsub job_altix150
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207	dimitri	1.41
208	dimitri	1.56	##########################################################################
209			##########################################################################
210			# 5105106*50, 1500-tile, 375-cpu, excludes land
211			# uses s1500t_17x51 configuration
212			# example for running on c17-c20 using arrayd
213
214			cd MITgcm/verification/global_ocean.cs32x15/code
215			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
216			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
217			\cp SIZE.h_375 SIZE.h
218			\cp packages.conf_hr packages.conf
219
220			cd ../build
221			\rm *
222			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
223			make depend
224			make -j
225
226			cd ..
227			mkdir run
228			cd run
229			\rm *
230			\cp ../input/* .
231			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
232			ln -sf ../../../../run_template/* .
233			\rm pickup*
234			ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
235			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
236			\cp ../build/mitgcmuv .
237	dimitri	1.57	job_c20_375cpu < /dev/null >&! output.run &
238
239
240			##########################################################################
241			##########################################################################
242			# 5105106*50, 1500-tile, 500-cpu, excludes land
243			# uses s1500t_17x51 configuration
244			# example for running on c17-c20 using arrayd
245
246			cd MITgcm/verification/global_ocean.cs32x15/code
247			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
248			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
249			\cp SIZE.h_500 SIZE.h
250			\cp packages.conf_hr packages.conf
251
252			cd ../build
253			\rm *
254			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
255			make depend
256			make -j
257
258			cd ..
259			mkdir run
260			cd run
261			\rm *
262			\cp ../input/* .
263			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
264			ln -sf ../../../../run_template/* .
265			\rm pickup*
266			ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
267			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
268			\cp ../build/mitgcmuv .
269			job_c19_500cpu < /dev/null >&! output.run &
270	dimitri	1.56
271
272
273	dimitri	1.41
274
275	dimitri	1.60	##########################################################################
276			##########################################################################
277			# 5105106*50, 216-cpu cube sphere on cosmos
278
279			cd MITgcm/verification/global_ocean.cs32x15/code
280			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
281			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
282			\cp SIZE.h_216 SIZE.h
283			\cp packages.conf_hr packages.conf
284
285			module unload latest_intel80
286			module unload mpich-gm-intel80
287			module load latest_intel81
288			module load mpich-gm-intel81
289
290			cd ../build
291			\rm *
292			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
293			make depend
294			make -j
295
296			cd ..
297			mkdir run
298			cd run
299			\rm *
300			\cp ../input/* .
301			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
302			ln -sf ../../../../run_template/* .
303			\rm pickup*
304			ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
305			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
306			\cp ../build/mitgcmuv .
307			bsub < job_cosmos
308
309	dimitri	1.41
310
311	dimitri	1.51
312
313
314
315
316	dimitri	1.41
317
318
319
320
321
322
323
324
325
326
327
328	dimitri	1.42	##########################################################################
329			##########################################################################
330			# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
331			# requires input files in sudirectories run_template and ncep_rgau
332			# presently residing under orion:/tmp1/dmenem/cube
333	dimitri	1.41
334	dimitri	1.42	cd MITgcm/verification/global_ocean.cs32x15/code
335			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
336			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
337			\cp SIZE.h_54 SIZE.h
338			\cp packages.conf_hr packages.conf
339	dimitri	1.41
340	dimitri	1.42	cd ../build
341			\rm *
342			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
343			make depend
344			make -j
345	dimitri	1.41
346	dimitri	1.42	cd ..
347			mkdir run
348			cd run
349			\rm *
350			\cp ../input/* .
351			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
352			qsub job_orion
353	dimitri	1.35
354
355			##########################################################################
356			##########################################################################
357	dimitri	1.41	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
358	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
359			# presently residing under orion:/tmp1/dmenem/cube
360
361			cd MITgcm/verification/global_ocean.cs32x15/code
362			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
363	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
364			\cp SIZE.h_41 SIZE.h
365	dimitri	1.35	\cp packages.conf_hr packages.conf
366
367			cd ../build
368			\rm *
369	dimitri	1.41	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
370	dimitri	1.35	make depend
371	dimitri	1.41	make -j
372	dimitri	1.35
373			cd ..
374			mkdir run
375			cd run
376			\rm *
377			\cp ../input/* .
378			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
379	dimitri	1.41	qsub job_orion41
380	dimitri	1.9
381
382			##########################################################################
383			##########################################################################
384	dimitri	1.41	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
385	dimitri	1.17	# requires input files in sudirectories run_template and ncep_rgau
386	dimitri	1.41	# presently residing under orion:/tmp1/dmenem/cube
387	dimitri	1.9
388			cd MITgcm/verification/global_ocean.cs32x15/code
389			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
390	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
391			\cp SIZE.h_50 SIZE.h
392	dimitri	1.12	\cp packages.conf_hr packages.conf
393	dimitri	1.9
394	dimitri	1.25	cd ../build
395	dimitri	1.15	\rm *
396	dimitri	1.13	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
397	dimitri	1.9	make depend
398	dimitri	1.41	make -j
399	dimitri	1.9
400			cd ..
401			mkdir run
402			cd run
403	dimitri	1.15	\rm *
404			\cp ../input/* .
405			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
406	dimitri	1.41	qsub job_orion