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dimitri |
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daInstructions for setting up a cube-sphere integration with sea-ice. |
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Date last updated: February 17, 2005 |
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Code and input used for integrating cube22. |
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dimitri |
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########################################################################## |
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########################################################################## |
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dimitri |
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# getting the code from anonymous CVS server |
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dimitri |
1.1 |
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dimitri |
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cvs co MITgcm_contrib/high_res_cube/README_ice |
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cvs co MITgcm_contrib/high_res_cube/code-mods |
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cvs co MITgcm_contrib/high_res_cube/input |
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cvs co MITgcm_contrib/high_res_cube/results |
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dimitri |
1.43 |
cvs co MITgcm_code |
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cvs co MITgcm/verification/global_ocean.cs32x15 |
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cvs co MITgcm/verification/testreport |
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dimitri |
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########################################################################## |
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########################################################################## |
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# 32*32*6*15, 1-cpu cube sphere |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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dimitri |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
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\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
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dimitri |
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code |
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make depend |
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make |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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../build/mitgcmuv >& output.txt |
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dimitri |
1.3 |
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dimitri |
1.37 |
comparison output is in: |
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../../../../MITgcm_contrib/high_res_cube/results/output.txt |
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to use matlab to look at the output |
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matlab |
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dimitri |
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for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ... |
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'QNETtave','FVtave','FUtave','EmPmRtave'} |
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dimitri |
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tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]); |
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cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
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end |
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dimitri |
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heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]); |
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dimitri |
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mask=0*heff; mask(find(heff>.001))=1; |
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dimitri |
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uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]); |
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vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]); |
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dimitri |
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clf |
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dimitri |
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subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3') |
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subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6') |
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subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3') |
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subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6') |
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dimitri |
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########################################################################## |
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########################################################################## |
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# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../code_alt/code.176t_8x4/* . |
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dimitri |
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cd ../build |
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dimitri |
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\rm * |
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dimitri |
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../../../tools/genmake2 -mods=../code |
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dimitri |
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make depend |
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make |
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cd .. |
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mkdir run |
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cd run |
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dimitri |
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\rm * |
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dimitri |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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dimitri |
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../build/mitgcmuv >& output.txt |
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dimitri |
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########################################################################## |
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########################################################################## |
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dimitri |
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# 32*32*6*15, 2-cpu cube sphere on the altices with ifort |
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dimitri |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
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\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
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dimitri |
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\cp SIZE.h_mpi SIZE.h |
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dimitri |
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cd ../build |
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dimitri |
1.14 |
\rm * |
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dimitri |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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dimitri |
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make depend |
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dimitri |
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make -j |
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dimitri |
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cd .. |
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mkdir run |
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cd run |
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dimitri |
1.14 |
\rm * |
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dimitri |
1.8 |
\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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mpirun -np 2 ../build/mitgcmuv |
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########################################################################## |
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########################################################################## |
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dimitri |
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# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc |
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dimitri |
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# starting with pickup file from end of 1992 |
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dimitri |
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# requires input files in sudirectories run_template and ncep_rgau |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* . |
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\cp packages.conf_hr packages.conf |
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cd ../build |
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\rm * |
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dimitri |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
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dimitri |
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make depend |
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dimitri |
1.41 |
make -j |
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dimitri |
1.35 |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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dimitri |
1.41 |
qsub job_altix92_54t |
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dimitri |
1.35 |
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########################################################################## |
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########################################################################## |
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dimitri |
1.52 |
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics |
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dimitri |
1.23 |
# requires input files in sudirectories run_template and ncep_rgau |
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dimitri |
1.41 |
# these can be obained from lou:/u/menemenl/cube |
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dimitri |
1.23 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
1.41 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
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\cp SIZE.h_216 SIZE.h |
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dimitri |
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\cp packages.conf_hr packages.conf |
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dimitri |
1.8 |
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dimitri |
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cd ../build |
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dimitri |
1.14 |
\rm * |
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dimitri |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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dimitri |
1.8 |
make depend |
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dimitri |
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make -j |
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dimitri |
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cd .. |
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mkdir run |
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cd run |
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dimitri |
1.14 |
\rm * |
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dimitri |
1.8 |
\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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dimitri |
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ln -sf ../../../../run_template/* . |
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dimitri |
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\rm pickup* |
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dimitri |
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ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data |
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data |
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dimitri |
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\cp ../build/mitgcmuv . |
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dimitri |
1.57 |
qsub job_altix |
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dimitri |
1.41 |
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dimitri |
1.56 |
########################################################################## |
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########################################################################## |
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# 510*510*6*50, 1500-tile, 375-cpu, excludes land |
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# uses s1500t_17x51 configuration |
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# example for running on c17-c20 using arrayd |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
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\cp SIZE.h_375 SIZE.h |
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\cp packages.conf_hr packages.conf |
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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ln -sf ../../../../run_template/* . |
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\rm pickup* |
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ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data |
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data |
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\cp ../build/mitgcmuv . |
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dimitri |
1.57 |
job_c20_375cpu < /dev/null >&! output.run & |
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########################################################################## |
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########################################################################## |
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# 510*510*6*50, 1500-tile, 500-cpu, excludes land |
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# uses s1500t_17x51 configuration |
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# example for running on c17-c20 using arrayd |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
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\cp SIZE.h_500 SIZE.h |
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\cp packages.conf_hr packages.conf |
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cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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ln -sf ../../../../run_template/* . |
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\rm pickup* |
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ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data |
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data |
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\cp ../build/mitgcmuv . |
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job_c19_500cpu < /dev/null >&! output.run & |
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dimitri |
1.56 |
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dimitri |
1.41 |
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dimitri |
1.51 |
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dimitri |
1.41 |
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dimitri |
1.42 |
########################################################################## |
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########################################################################## |
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# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc |
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# requires input files in sudirectories run_template and ncep_rgau |
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# presently residing under orion:/tmp1/dmenem/cube |
256 |
dimitri |
1.41 |
|
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dimitri |
1.42 |
cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
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\cp SIZE.h_54 SIZE.h |
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\cp packages.conf_hr packages.conf |
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dimitri |
1.41 |
|
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dimitri |
1.42 |
cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
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make depend |
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make -j |
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dimitri |
1.41 |
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dimitri |
1.42 |
cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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qsub job_orion |
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dimitri |
1.35 |
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########################################################################## |
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########################################################################## |
280 |
dimitri |
1.41 |
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc |
281 |
dimitri |
1.35 |
# requires input files in sudirectories run_template and ncep_rgau |
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# presently residing under orion:/tmp1/dmenem/cube |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
1.41 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* . |
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\cp SIZE.h_41 SIZE.h |
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dimitri |
1.35 |
\cp packages.conf_hr packages.conf |
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cd ../build |
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\rm * |
292 |
dimitri |
1.41 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
293 |
dimitri |
1.35 |
make depend |
294 |
dimitri |
1.41 |
make -j |
295 |
dimitri |
1.35 |
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cd .. |
297 |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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dimitri |
1.41 |
qsub job_orion41 |
303 |
dimitri |
1.9 |
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########################################################################## |
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########################################################################## |
307 |
dimitri |
1.41 |
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc |
308 |
dimitri |
1.17 |
# requires input files in sudirectories run_template and ncep_rgau |
309 |
dimitri |
1.41 |
# presently residing under orion:/tmp1/dmenem/cube |
310 |
dimitri |
1.9 |
|
311 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
312 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
1.41 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
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\cp SIZE.h_50 SIZE.h |
315 |
dimitri |
1.12 |
\cp packages.conf_hr packages.conf |
316 |
dimitri |
1.9 |
|
317 |
dimitri |
1.25 |
cd ../build |
318 |
dimitri |
1.15 |
\rm * |
319 |
dimitri |
1.13 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
320 |
dimitri |
1.9 |
make depend |
321 |
dimitri |
1.41 |
make -j |
322 |
dimitri |
1.9 |
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cd .. |
324 |
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mkdir run |
325 |
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cd run |
326 |
dimitri |
1.15 |
\rm * |
327 |
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\cp ../input/* . |
328 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
329 |
dimitri |
1.41 |
qsub job_orion |