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dimitri |
1.52 |
daInstructions for setting up a cube-sphere integration with sea-ice. |
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Date last updated: February 17, 2005 |
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Code and input used for integrating cube22. |
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dimitri |
1.8 |
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########################################################################## |
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########################################################################## |
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dimitri |
1.14 |
# getting the code from anonymous CVS server |
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dimitri |
1.1 |
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dimitri |
1.38 |
cvs co MITgcm_contrib/high_res_cube/README_ice |
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cvs co MITgcm_contrib/high_res_cube/code-mods |
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cvs co MITgcm_contrib/high_res_cube/input |
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cvs co MITgcm_contrib/high_res_cube/results |
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dimitri |
1.43 |
cvs co MITgcm_code |
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cvs co MITgcm/verification/global_ocean.cs32x15 |
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cvs co MITgcm/verification/testreport |
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dimitri |
1.14 |
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########################################################################## |
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########################################################################## |
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# 32*32*6*15, 1-cpu cube sphere |
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dimitri |
1.3 |
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dimitri |
1.1 |
cd MITgcm/verification/global_ocean.cs32x15/code |
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dimitri |
1.8 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
1.33 |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
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dimitri |
1.37 |
cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code |
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make depend |
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make |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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../build/mitgcmuv >& output.txt |
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dimitri |
1.3 |
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dimitri |
1.37 |
comparison output is in: |
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../../../../MITgcm_contrib/high_res_cube/results/output.txt |
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to use matlab to look at the output |
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matlab |
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dimitri |
1.55 |
for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ... |
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'QNETtave','FVtave','FUtave','EmPmRtave'} |
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dimitri |
1.37 |
tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]); |
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cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
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end |
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dimitri |
1.55 |
heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]); |
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dimitri |
1.37 |
mask=0*heff; mask(find(heff>.001))=1; |
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dimitri |
1.55 |
uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]); |
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vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]); |
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dimitri |
1.37 |
clf |
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dimitri |
1.55 |
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3') |
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subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6') |
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subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3') |
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subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6') |
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dimitri |
1.37 |
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########################################################################## |
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########################################################################## |
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# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../code_alt/code.176t_8x4/* . |
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dimitri |
1.25 |
cd ../build |
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dimitri |
1.37 |
\rm * |
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dimitri |
1.10 |
../../../tools/genmake2 -mods=../code |
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dimitri |
1.1 |
make depend |
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make |
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cd .. |
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mkdir run |
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cd run |
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dimitri |
1.37 |
\rm * |
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dimitri |
1.8 |
\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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dimitri |
1.3 |
../build/mitgcmuv >& output.txt |
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dimitri |
1.8 |
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########################################################################## |
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########################################################################## |
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# 32*32*6*15, 2-cpu cube sphere on the altices with efc |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
1.33 |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
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dimitri |
1.8 |
\cp SIZE.h_mpi SIZE.h |
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dimitri |
1.25 |
cd ../build |
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dimitri |
1.14 |
\rm * |
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dimitri |
1.54 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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dimitri |
1.8 |
make depend |
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dimitri |
1.41 |
make -j |
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dimitri |
1.8 |
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cd .. |
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mkdir run |
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cd run |
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dimitri |
1.14 |
\rm * |
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dimitri |
1.8 |
\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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mpirun -np 2 ../build/mitgcmuv |
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########################################################################## |
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########################################################################## |
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dimitri |
1.35 |
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc |
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dimitri |
1.36 |
# starting with pickup file from end of 1992 |
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dimitri |
1.35 |
# requires input files in sudirectories run_template and ncep_rgau |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* . |
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\cp packages.conf_hr packages.conf |
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cd ../build |
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\rm * |
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dimitri |
1.40 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
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dimitri |
1.35 |
make depend |
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dimitri |
1.41 |
make -j |
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dimitri |
1.35 |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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dimitri |
1.41 |
qsub job_altix92_54t |
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dimitri |
1.35 |
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########################################################################## |
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########################################################################## |
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dimitri |
1.52 |
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics |
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dimitri |
1.23 |
# requires input files in sudirectories run_template and ncep_rgau |
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dimitri |
1.41 |
# these can be obained from lou:/u/menemenl/cube |
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dimitri |
1.23 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
1.41 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
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\cp SIZE.h_216 SIZE.h |
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dimitri |
1.23 |
\cp packages.conf_hr packages.conf |
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dimitri |
1.8 |
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dimitri |
1.25 |
cd ../build |
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dimitri |
1.14 |
\rm * |
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dimitri |
1.46 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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dimitri |
1.8 |
make depend |
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dimitri |
1.52 |
make -j |
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dimitri |
1.8 |
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cd .. |
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mkdir run |
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cd run |
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dimitri |
1.14 |
\rm * |
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dimitri |
1.8 |
\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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dimitri |
1.44 |
ln -sf ../../../../run_template/* . |
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dimitri |
1.50 |
\rm pickup* |
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dimitri |
1.53 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data |
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ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data |
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dimitri |
1.44 |
\cp ../build/mitgcmuv . |
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dimitri |
1.41 |
qsub job_altix92 |
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dimitri |
1.51 |
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dimitri |
1.41 |
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dimitri |
1.42 |
########################################################################## |
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########################################################################## |
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# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc |
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# requires input files in sudirectories run_template and ncep_rgau |
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# presently residing under orion:/tmp1/dmenem/cube |
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dimitri |
1.41 |
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dimitri |
1.42 |
cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
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\cp SIZE.h_54 SIZE.h |
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\cp packages.conf_hr packages.conf |
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dimitri |
1.41 |
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dimitri |
1.42 |
cd ../build |
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\rm * |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
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make depend |
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make -j |
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dimitri |
1.41 |
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dimitri |
1.42 |
cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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qsub job_orion |
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dimitri |
1.35 |
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########################################################################## |
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########################################################################## |
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dimitri |
1.41 |
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc |
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dimitri |
1.35 |
# requires input files in sudirectories run_template and ncep_rgau |
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# presently residing under orion:/tmp1/dmenem/cube |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
1.41 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* . |
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\cp SIZE.h_41 SIZE.h |
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dimitri |
1.35 |
\cp packages.conf_hr packages.conf |
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cd ../build |
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\rm * |
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dimitri |
1.41 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
| 228 |
dimitri |
1.35 |
make depend |
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dimitri |
1.41 |
make -j |
| 230 |
dimitri |
1.35 |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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dimitri |
1.41 |
qsub job_orion41 |
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dimitri |
1.9 |
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########################################################################## |
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########################################################################## |
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dimitri |
1.41 |
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc |
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dimitri |
1.17 |
# requires input files in sudirectories run_template and ncep_rgau |
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dimitri |
1.41 |
# presently residing under orion:/tmp1/dmenem/cube |
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dimitri |
1.9 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
1.41 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
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\cp SIZE.h_50 SIZE.h |
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dimitri |
1.12 |
\cp packages.conf_hr packages.conf |
| 251 |
dimitri |
1.9 |
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dimitri |
1.25 |
cd ../build |
| 253 |
dimitri |
1.15 |
\rm * |
| 254 |
dimitri |
1.13 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
| 255 |
dimitri |
1.9 |
make depend |
| 256 |
dimitri |
1.41 |
make -j |
| 257 |
dimitri |
1.9 |
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cd .. |
| 259 |
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mkdir run |
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cd run |
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dimitri |
1.15 |
\rm * |
| 262 |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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dimitri |
1.41 |
qsub job_orion |
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dimitri |
1.17 |
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########################################################################## |
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########################################################################## |
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# matlab script for generating pChkptFreq |
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nTimeSteps=26352; |
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dimitri |
1.34 |
for niter0=216:26352:(26352*12) |
| 273 |
dimitri |
1.17 |
pChkptFreq=(niter0+nTimeSteps)*1200; |
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day=pChkptFreq/24/60/60; |
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disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ... |
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datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)]) |
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end |
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niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600 |
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niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000 |
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niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400 |
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niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800 |
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niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200 |
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niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600 |
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niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000 |
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niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400 |
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niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800 |
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niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200 |
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niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600 |
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dimitri |
1.34 |
niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000 |
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dimitri |
1.48 |
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#!/bin/csh |
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\cp data.pkg_hr data.pkg |
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\cp data.seaice_hr data.seaice |
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\cp data.exf_clim_hr data.exf_clim |
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\cp data_hr92 data |
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./modpickup |
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\cp data.exf_hr92 data.exf |
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/opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv |
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mkdir out.1992 |
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\mv STDOUT.0000 *.data pickup*.meta out.1992 |
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\cp data* out.1992 |
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\rm STD* *.meta |
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