Annotation of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.
Date last tested: July 9, 2004.
Code and input used for integrating cube9.


##########################################################################
##########################################################################
# getting the code from anonymous CVS server

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/testreport


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
    tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
    tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with efc

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort
# requires input files in sudirectories run_template and ncep_rgau
# these can be obained from lou:/u/menemenl/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j 4

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube20 pickup.0000000216.data
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube20 pickup_seaice.0000000216.data
\cp ../build/mitgcmuv .
qsub job_altix92


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
# requires input files in sudirectories run_template and ncep_rgau
# these can be obained from lou:/u/menemenl/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_diagnostics packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j 4

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube20 pickup.0000000216.data
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube20 pickup_seaice.0000000216.data
\cp ../build/mitgcmuv .
qsub job_altix92


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# matlab script for generating pChkptFreq

nTimeSteps=26352;
for niter0=216:26352:(26352*12)
 pChkptFreq=(niter0+nTimeSteps)*1200;
 day=pChkptFreq/24/60/60;
 disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
 datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
end

niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000


#!/bin/csh
\cp data.pkg_hr data.pkg
\cp data.seaice_hr data.seaice
\cp data.exf_clim_hr data.exf_clim

\cp data_hr92 data
./modpickup
\cp data.exf_hr92 data.exf
/opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv
mkdir out.1992
\mv STDOUT.0000 *.data pickup*.meta out.1992
\cp data* out.1992
\rm STD* *.meta
1	dimitri	1.1	Instructions for setting up a cube-sphere integration with sea-ice.
2	dimitri	1.41	Date last tested: July 9, 2004.
3			Code and input used for integrating cube9.
4	dimitri	1.8
5
6			##########################################################################
7			##########################################################################
8	dimitri	1.14	# getting the code from anonymous CVS server
9	dimitri	1.1
10	dimitri	1.38	cvs co MITgcm_contrib/high_res_cube/README_ice
11			cvs co MITgcm_contrib/high_res_cube/code-mods
12			cvs co MITgcm_contrib/high_res_cube/input
13			cvs co MITgcm_contrib/high_res_cube/results
14	dimitri	1.43	cvs co MITgcm_code
15			cvs co MITgcm/verification/global_ocean.cs32x15
16			cvs co MITgcm/verification/testreport
17	dimitri	1.14
18
19			##########################################################################
20			##########################################################################
21			# 32326*15, 1-cpu cube sphere
22	dimitri	1.3
23	dimitri	1.1	cd MITgcm/verification/global_ocean.cs32x15/code
24	dimitri	1.8	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
25	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
26	dimitri	1.37	cd ../build
27			\rm *
28			../../../tools/genmake2 -mods=../code
29			make depend
30			make
31			cd ..
32			mkdir run
33			cd run
34			\rm *
35			\cp ../input/* .
36			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
37			../build/mitgcmuv >& output.txt
38	dimitri	1.3
39	dimitri	1.37	comparison output is in:
40			../../../../MITgcm_contrib/high_res_cube/results/output.txt
41
42			to use matlab to look at the output
43			matlab
44
45			for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
46			tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
47			cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
48			end
49
50			heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
51			mask=0*heff; mask(find(heff>.001))=1;
52			uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
53			vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
54			clf
55			subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
56			subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
57			subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
58			subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
59
60
61			##########################################################################
62			##########################################################################
63			# 32326*15, 17-tile, 1-cpu cube sphere experiment
64
65			cd MITgcm/verification/global_ocean.cs32x15/code
66			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
67			\cp ../code_alt/code.176t_8x4/* .
68	dimitri	1.25	cd ../build
69	dimitri	1.37	\rm *
70	dimitri	1.10	../../../tools/genmake2 -mods=../code
71	dimitri	1.1	make depend
72			make
73			cd ..
74			mkdir run
75			cd run
76	dimitri	1.37	\rm *
77	dimitri	1.8	\cp ../input/* .
78			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79	dimitri	1.3	../build/mitgcmuv >& output.txt
80
81			comparison output is in:
82			../../../../MITgcm_contrib/high_res_cube/results/output.txt
83
84			to use matlab to look at the output
85			matlab
86	dimitri	1.17
87	dimitri	1.5	for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
88	dimitri	1.13	tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
89	dimitri	1.4	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
90			end
91	dimitri	1.8
92	dimitri	1.17	heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
93			mask=0*heff; mask(find(heff>.001))=1;
94			uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
95			vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
96			clf
97			subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
98			subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
99			subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
100			subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
101
102	dimitri	1.8
103			##########################################################################
104			##########################################################################
105			# 32326*15, 2-cpu cube sphere on the altices with efc
106
107			cd MITgcm/verification/global_ocean.cs32x15/code
108			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
109	dimitri	1.33	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
110	dimitri	1.8	\cp SIZE.h_mpi SIZE.h
111
112	dimitri	1.25	cd ../build
113	dimitri	1.14	\rm *
114	dimitri	1.41	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
115	dimitri	1.8	make depend
116	dimitri	1.41	make -j
117	dimitri	1.8
118			cd ..
119			mkdir run
120			cd run
121	dimitri	1.14	\rm *
122	dimitri	1.8	\cp ../input/* .
123			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
124			mpirun -np 2 ../build/mitgcmuv
125
126
127			##########################################################################
128			##########################################################################
129	dimitri	1.35	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
130	dimitri	1.36	# starting with pickup file from end of 1992
131	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
132
133			cd MITgcm/verification/global_ocean.cs32x15/code
134			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
135			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
136			\cp packages.conf_hr packages.conf
137
138			cd ../build
139			\rm *
140	dimitri	1.40	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
141	dimitri	1.35	make depend
142	dimitri	1.41	make -j
143	dimitri	1.35
144			cd ..
145			mkdir run
146			cd run
147			\rm *
148			\cp ../input/* .
149			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
150	dimitri	1.41	qsub job_altix92_54t
151	dimitri	1.35
152
153			##########################################################################
154			##########################################################################
155	dimitri	1.47	# 5105106*50, 216-cpu cube sphere on altix with ifort
156	dimitri	1.23	# requires input files in sudirectories run_template and ncep_rgau
157	dimitri	1.41	# these can be obained from lou:/u/menemenl/cube
158	dimitri	1.23
159			cd MITgcm/verification/global_ocean.cs32x15/code
160			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
161	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
162			\cp SIZE.h_216 SIZE.h
163	dimitri	1.23	\cp packages.conf_hr packages.conf
164	dimitri	1.8
165	dimitri	1.25	cd ../build
166	dimitri	1.14	\rm *
167	dimitri	1.46	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
168	dimitri	1.8	make depend
169	dimitri	1.45	make -j 4
170	dimitri	1.8
171			cd ..
172			mkdir run
173			cd run
174	dimitri	1.14	\rm *
175	dimitri	1.8	\cp ../input/* .
176			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
177	dimitri	1.44	ln -sf ../../../../run_template/* .
178	dimitri	1.50	\rm pickup*
179			ln -sf ../../../../run_template/pickup.0000316440.cube20 pickup.0000000216.data
180			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube20 pickup_seaice.0000000216.data
181	dimitri	1.44	\cp ../build/mitgcmuv .
182	dimitri	1.41	qsub job_altix92
183
184
185
186
187
188
189	dimitri	1.51	##########################################################################
190			##########################################################################
191			# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
192			# requires input files in sudirectories run_template and ncep_rgau
193			# these can be obained from lou:/u/menemenl/cube
194
195			cd MITgcm/verification/global_ocean.cs32x15/code
196			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
197			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
198			\cp SIZE.h_216 SIZE.h
199			\cp packages.conf_diagnostics packages.conf
200
201			cd ../build
202			\rm *
203			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
204			make depend
205			make -j 4
206
207			cd ..
208			mkdir run
209			cd run
210			\rm *
211			\cp ../input/* .
212			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
213			ln -sf ../../../../run_template/* .
214			\rm pickup*
215			ln -sf ../../../../run_template/pickup.0000316440.cube20 pickup.0000000216.data
216			ln -sf ../../../../run_template/pickup_seaice.0000316440.cube20 pickup_seaice.0000000216.data
217			\cp ../build/mitgcmuv .
218			qsub job_altix92
219
220
221
222
223
224
225	dimitri	1.41
226
227
228
229
230
231
232
233
234
235
236
237	dimitri	1.42	##########################################################################
238			##########################################################################
239			# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
240			# requires input files in sudirectories run_template and ncep_rgau
241			# presently residing under orion:/tmp1/dmenem/cube
242	dimitri	1.41
243	dimitri	1.42	cd MITgcm/verification/global_ocean.cs32x15/code
244			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
245			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
246			\cp SIZE.h_54 SIZE.h
247			\cp packages.conf_hr packages.conf
248	dimitri	1.41
249	dimitri	1.42	cd ../build
250			\rm *
251			../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
252			make depend
253			make -j
254	dimitri	1.41
255	dimitri	1.42	cd ..
256			mkdir run
257			cd run
258			\rm *
259			\cp ../input/* .
260			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
261			qsub job_orion
262	dimitri	1.35
263
264			##########################################################################
265			##########################################################################
266	dimitri	1.41	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
267	dimitri	1.35	# requires input files in sudirectories run_template and ncep_rgau
268			# presently residing under orion:/tmp1/dmenem/cube
269
270			cd MITgcm/verification/global_ocean.cs32x15/code
271			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
272	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
273			\cp SIZE.h_41 SIZE.h
274	dimitri	1.35	\cp packages.conf_hr packages.conf
275
276			cd ../build
277			\rm *
278	dimitri	1.41	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
279	dimitri	1.35	make depend
280	dimitri	1.41	make -j
281	dimitri	1.35
282			cd ..
283			mkdir run
284			cd run
285			\rm *
286			\cp ../input/* .
287			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
288	dimitri	1.41	qsub job_orion41
289	dimitri	1.9
290
291			##########################################################################
292			##########################################################################
293	dimitri	1.41	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
294	dimitri	1.17	# requires input files in sudirectories run_template and ncep_rgau
295	dimitri	1.41	# presently residing under orion:/tmp1/dmenem/cube
296	dimitri	1.9
297			cd MITgcm/verification/global_ocean.cs32x15/code
298			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
299	dimitri	1.41	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
300			\cp SIZE.h_50 SIZE.h
301	dimitri	1.12	\cp packages.conf_hr packages.conf
302	dimitri	1.9
303	dimitri	1.25	cd ../build
304	dimitri	1.15	\rm *
305	dimitri	1.13	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
306	dimitri	1.9	make depend
307	dimitri	1.41	make -j
308	dimitri	1.9
309			cd ..
310			mkdir run
311			cd run
312	dimitri	1.15	\rm *
313			\cp ../input/* .
314			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
315	dimitri	1.41	qsub job_orion
316	dimitri	1.17
317
318			##########################################################################
319			##########################################################################
320			# matlab script for generating pChkptFreq
321
322			nTimeSteps=26352;
323	dimitri	1.34	for niter0=216:26352:(26352*12)
324	dimitri	1.17	pChkptFreq=(niter0+nTimeSteps)*1200;
325			day=pChkptFreq/24/60/60;
326			disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
327			datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
328			end
329
330			niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
331			niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
332			niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
333			niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
334			niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
335			niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
336			niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
337			niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
338			niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
339			niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
340			niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
341	dimitri	1.34	niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
342	dimitri	1.48
343
344
345
346
347
348			#!/bin/csh
349			\cp data.pkg_hr data.pkg
350			\cp data.seaice_hr data.seaice
351			\cp data.exf_clim_hr data.exf_clim
352
353			\cp data_hr92 data
354			./modpickup
355			\cp data.exf_hr92 data.exf
356			/opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv
357			mkdir out.1992
358			\mv STDOUT.0000 .data pickup.meta out.1992
359			\cp data* out.1992
360			\rm STD* *.meta