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Revision 1.47 - (hide annotations) (download)
Wed Dec 22 17:22:05 2004 UTC (19 years, 5 months ago) by dimitri
Branch: MAIN
Changes since 1.46: +1 -1 lines
high_res_cube/*

1 dimitri 1.1 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.41 Date last tested: July 9, 2004.
3     Code and input used for integrating cube9.
4 dimitri 1.8
5    
6     ##########################################################################
7     ##########################################################################
8 dimitri 1.14 # getting the code from anonymous CVS server
9 dimitri 1.1
10 dimitri 1.38 cvs co MITgcm_contrib/high_res_cube/README_ice
11     cvs co MITgcm_contrib/high_res_cube/code-mods
12     cvs co MITgcm_contrib/high_res_cube/input
13     cvs co MITgcm_contrib/high_res_cube/results
14 dimitri 1.43 cvs co MITgcm_code
15     cvs co MITgcm/verification/global_ocean.cs32x15
16     cvs co MITgcm/verification/testreport
17 dimitri 1.14
18    
19     ##########################################################################
20     ##########################################################################
21     # 32*32*6*15, 1-cpu cube sphere
22 dimitri 1.3
23 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
24 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
25 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
26 dimitri 1.37 cd ../build
27     \rm *
28     ../../../tools/genmake2 -mods=../code
29     make depend
30     make
31     cd ..
32     mkdir run
33     cd run
34     \rm *
35     \cp ../input/* .
36     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
37     ../build/mitgcmuv >& output.txt
38 dimitri 1.3
39 dimitri 1.37 comparison output is in:
40     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
41    
42     to use matlab to look at the output
43     matlab
44    
45     for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
46     tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
47     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
48     end
49    
50     heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
51     mask=0*heff; mask(find(heff>.001))=1;
52     uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
53     vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
54     clf
55     subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
56     subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
57     subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
58     subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
59    
60    
61     ##########################################################################
62     ##########################################################################
63     # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
64    
65     cd MITgcm/verification/global_ocean.cs32x15/code
66     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
67     \cp ../code_alt/code.176t_8x4/* .
68 dimitri 1.25 cd ../build
69 dimitri 1.37 \rm *
70 dimitri 1.10 ../../../tools/genmake2 -mods=../code
71 dimitri 1.1 make depend
72     make
73     cd ..
74     mkdir run
75     cd run
76 dimitri 1.37 \rm *
77 dimitri 1.8 \cp ../input/* .
78     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79 dimitri 1.3 ../build/mitgcmuv >& output.txt
80    
81     comparison output is in:
82     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
83    
84     to use matlab to look at the output
85     matlab
86 dimitri 1.17
87 dimitri 1.5 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
88 dimitri 1.13 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
89 dimitri 1.4 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
90     end
91 dimitri 1.8
92 dimitri 1.17 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
93     mask=0*heff; mask(find(heff>.001))=1;
94     uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
95     vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
96     clf
97     subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
98     subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
99     subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
100     subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
101    
102 dimitri 1.8
103     ##########################################################################
104     ##########################################################################
105     # 32*32*6*15, 2-cpu cube sphere on the altices with efc
106    
107     cd MITgcm/verification/global_ocean.cs32x15/code
108     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
109 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
110 dimitri 1.8 \cp SIZE.h_mpi SIZE.h
111    
112 dimitri 1.25 cd ../build
113 dimitri 1.14 \rm *
114 dimitri 1.41 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
115 dimitri 1.8 make depend
116 dimitri 1.41 make -j
117 dimitri 1.8
118     cd ..
119     mkdir run
120     cd run
121 dimitri 1.14 \rm *
122 dimitri 1.8 \cp ../input/* .
123     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
124     mpirun -np 2 ../build/mitgcmuv
125    
126    
127     ##########################################################################
128     ##########################################################################
129 dimitri 1.35 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
130 dimitri 1.36 # starting with pickup file from end of 1992
131 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
132    
133     cd MITgcm/verification/global_ocean.cs32x15/code
134     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
135     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
136     \cp packages.conf_hr packages.conf
137    
138     cd ../build
139     \rm *
140 dimitri 1.40 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
141 dimitri 1.35 make depend
142 dimitri 1.41 make -j
143 dimitri 1.35
144     cd ..
145     mkdir run
146     cd run
147     \rm *
148     \cp ../input/* .
149     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
150 dimitri 1.41 qsub job_altix92_54t
151 dimitri 1.35
152    
153     ##########################################################################
154     ##########################################################################
155 dimitri 1.47 # 510*510*6*50, 216-cpu cube sphere on altix with ifort
156 dimitri 1.23 # requires input files in sudirectories run_template and ncep_rgau
157 dimitri 1.41 # these can be obained from lou:/u/menemenl/cube
158 dimitri 1.23
159     cd MITgcm/verification/global_ocean.cs32x15/code
160     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
161 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
162     \cp SIZE.h_216 SIZE.h
163 dimitri 1.23 \cp packages.conf_hr packages.conf
164 dimitri 1.8
165 dimitri 1.25 cd ../build
166 dimitri 1.14 \rm *
167 dimitri 1.46 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
168 dimitri 1.8 make depend
169 dimitri 1.45 make -j 4
170 dimitri 1.8
171     cd ..
172     mkdir run
173     cd run
174 dimitri 1.14 \rm *
175 dimitri 1.8 \cp ../input/* .
176     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
177 dimitri 1.44 ln -sf ../../../../run_template/* .
178     ln -sf pickup.0000290088.data.cube10 pickup.0000000216.data
179     ln -sf pickup_seaice.0000290088.data.cube10 pickup_seaice.0000000216.data
180     \cp ../build/mitgcmuv .
181 dimitri 1.41 qsub job_altix92
182    
183    
184    
185    
186    
187    
188    
189    
190    
191    
192    
193    
194    
195    
196    
197    
198    
199    
200 dimitri 1.42 ##########################################################################
201     ##########################################################################
202     # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
203     # requires input files in sudirectories run_template and ncep_rgau
204     # presently residing under orion:/tmp1/dmenem/cube
205 dimitri 1.41
206 dimitri 1.42 cd MITgcm/verification/global_ocean.cs32x15/code
207     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
208     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
209     \cp SIZE.h_54 SIZE.h
210     \cp packages.conf_hr packages.conf
211 dimitri 1.41
212 dimitri 1.42 cd ../build
213     \rm *
214     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
215     make depend
216     make -j
217 dimitri 1.41
218 dimitri 1.42 cd ..
219     mkdir run
220     cd run
221     \rm *
222     \cp ../input/* .
223     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
224     qsub job_orion
225 dimitri 1.35
226    
227     ##########################################################################
228     ##########################################################################
229 dimitri 1.41 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
230 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
231     # presently residing under orion:/tmp1/dmenem/cube
232    
233     cd MITgcm/verification/global_ocean.cs32x15/code
234     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
235 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
236     \cp SIZE.h_41 SIZE.h
237 dimitri 1.35 \cp packages.conf_hr packages.conf
238    
239     cd ../build
240     \rm *
241 dimitri 1.41 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
242 dimitri 1.35 make depend
243 dimitri 1.41 make -j
244 dimitri 1.35
245     cd ..
246     mkdir run
247     cd run
248     \rm *
249     \cp ../input/* .
250     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
251 dimitri 1.41 qsub job_orion41
252 dimitri 1.9
253    
254     ##########################################################################
255     ##########################################################################
256 dimitri 1.41 # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
257 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
258 dimitri 1.41 # presently residing under orion:/tmp1/dmenem/cube
259 dimitri 1.9
260     cd MITgcm/verification/global_ocean.cs32x15/code
261     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
262 dimitri 1.41 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
263     \cp SIZE.h_50 SIZE.h
264 dimitri 1.12 \cp packages.conf_hr packages.conf
265 dimitri 1.9
266 dimitri 1.25 cd ../build
267 dimitri 1.15 \rm *
268 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
269 dimitri 1.9 make depend
270 dimitri 1.41 make -j
271 dimitri 1.9
272     cd ..
273     mkdir run
274     cd run
275 dimitri 1.15 \rm *
276     \cp ../input/* .
277     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
278 dimitri 1.41 qsub job_orion
279 dimitri 1.17
280    
281     ##########################################################################
282     ##########################################################################
283     # matlab script for generating pChkptFreq
284    
285     nTimeSteps=26352;
286 dimitri 1.34 for niter0=216:26352:(26352*12)
287 dimitri 1.17 pChkptFreq=(niter0+nTimeSteps)*1200;
288     day=pChkptFreq/24/60/60;
289     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
290     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
291     end
292    
293     niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
294     niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
295     niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
296     niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
297     niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
298     niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
299     niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
300     niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
301     niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
302     niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
303     niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
304 dimitri 1.34 niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000

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