| 1 |
dimitri |
1.1 |
Instructions for setting up a cube-sphere integration with sea-ice. |
| 2 |
dimitri |
1.41 |
Date last tested: July 9, 2004. |
| 3 |
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Code and input used for integrating cube9. |
| 4 |
dimitri |
1.8 |
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| 5 |
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| 6 |
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########################################################################## |
| 7 |
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########################################################################## |
| 8 |
dimitri |
1.14 |
# getting the code from anonymous CVS server |
| 9 |
dimitri |
1.1 |
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| 10 |
dimitri |
1.38 |
cvs co MITgcm_contrib/high_res_cube/README_ice |
| 11 |
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cvs co MITgcm_contrib/high_res_cube/code-mods |
| 12 |
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cvs co MITgcm_contrib/high_res_cube/input |
| 13 |
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cvs co MITgcm_contrib/high_res_cube/results |
| 14 |
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cvs co MITgcm_contrib/edge_problem |
| 15 |
dimitri |
1.43 |
cvs co MITgcm_code |
| 16 |
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cvs co MITgcm/verification/global_ocean.cs32x15 |
| 17 |
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cvs co MITgcm/verification/testreport |
| 18 |
dimitri |
1.14 |
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| 19 |
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| 20 |
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########################################################################## |
| 21 |
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########################################################################## |
| 22 |
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# 32*32*6*15, 1-cpu cube sphere |
| 23 |
dimitri |
1.3 |
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| 24 |
dimitri |
1.1 |
cd MITgcm/verification/global_ocean.cs32x15/code |
| 25 |
dimitri |
1.8 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 26 |
dimitri |
1.33 |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
| 27 |
dimitri |
1.37 |
cd ../build |
| 28 |
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\rm * |
| 29 |
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../../../tools/genmake2 -mods=../code |
| 30 |
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make depend |
| 31 |
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make |
| 32 |
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cd .. |
| 33 |
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mkdir run |
| 34 |
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cd run |
| 35 |
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\rm * |
| 36 |
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\cp ../input/* . |
| 37 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 38 |
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../build/mitgcmuv >& output.txt |
| 39 |
dimitri |
1.3 |
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| 40 |
dimitri |
1.37 |
comparison output is in: |
| 41 |
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../../../../MITgcm_contrib/high_res_cube/results/output.txt |
| 42 |
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| 43 |
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to use matlab to look at the output |
| 44 |
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matlab |
| 45 |
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| 46 |
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for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'} |
| 47 |
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tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]); |
| 48 |
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cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
| 49 |
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end |
| 50 |
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| 51 |
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heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]); |
| 52 |
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mask=0*heff; mask(find(heff>.001))=1; |
| 53 |
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uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]); |
| 54 |
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vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]); |
| 55 |
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clf |
| 56 |
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subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3') |
| 57 |
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subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6') |
| 58 |
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subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3') |
| 59 |
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subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6') |
| 60 |
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| 61 |
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| 62 |
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########################################################################## |
| 63 |
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########################################################################## |
| 64 |
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# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment |
| 65 |
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| 66 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
| 67 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 68 |
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\cp ../code_alt/code.176t_8x4/* . |
| 69 |
dimitri |
1.25 |
cd ../build |
| 70 |
dimitri |
1.37 |
\rm * |
| 71 |
dimitri |
1.10 |
../../../tools/genmake2 -mods=../code |
| 72 |
dimitri |
1.1 |
make depend |
| 73 |
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make |
| 74 |
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cd .. |
| 75 |
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mkdir run |
| 76 |
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cd run |
| 77 |
dimitri |
1.37 |
\rm * |
| 78 |
dimitri |
1.8 |
\cp ../input/* . |
| 79 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 80 |
dimitri |
1.3 |
../build/mitgcmuv >& output.txt |
| 81 |
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| 82 |
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comparison output is in: |
| 83 |
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../../../../MITgcm_contrib/high_res_cube/results/output.txt |
| 84 |
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| 85 |
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to use matlab to look at the output |
| 86 |
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matlab |
| 87 |
dimitri |
1.17 |
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| 88 |
dimitri |
1.5 |
for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'} |
| 89 |
dimitri |
1.13 |
tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]); |
| 90 |
dimitri |
1.4 |
cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
| 91 |
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end |
| 92 |
dimitri |
1.8 |
|
| 93 |
dimitri |
1.17 |
heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]); |
| 94 |
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mask=0*heff; mask(find(heff>.001))=1; |
| 95 |
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uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]); |
| 96 |
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vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]); |
| 97 |
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clf |
| 98 |
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subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3') |
| 99 |
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subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6') |
| 100 |
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subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3') |
| 101 |
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subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6') |
| 102 |
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| 103 |
dimitri |
1.8 |
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| 104 |
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########################################################################## |
| 105 |
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########################################################################## |
| 106 |
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# 32*32*6*15, 2-cpu cube sphere on the altices with efc |
| 107 |
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| 108 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
| 109 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 110 |
dimitri |
1.33 |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
| 111 |
dimitri |
1.8 |
\cp SIZE.h_mpi SIZE.h |
| 112 |
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| 113 |
dimitri |
1.25 |
cd ../build |
| 114 |
dimitri |
1.14 |
\rm * |
| 115 |
dimitri |
1.41 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
| 116 |
dimitri |
1.8 |
make depend |
| 117 |
dimitri |
1.41 |
make -j |
| 118 |
dimitri |
1.8 |
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| 119 |
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cd .. |
| 120 |
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mkdir run |
| 121 |
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cd run |
| 122 |
dimitri |
1.14 |
\rm * |
| 123 |
dimitri |
1.8 |
\cp ../input/* . |
| 124 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 125 |
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mpirun -np 2 ../build/mitgcmuv |
| 126 |
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| 127 |
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| 128 |
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########################################################################## |
| 129 |
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########################################################################## |
| 130 |
dimitri |
1.35 |
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc |
| 131 |
dimitri |
1.36 |
# starting with pickup file from end of 1992 |
| 132 |
dimitri |
1.35 |
# requires input files in sudirectories run_template and ncep_rgau |
| 133 |
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| 134 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
| 135 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* . |
| 137 |
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\cp packages.conf_hr packages.conf |
| 138 |
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| 139 |
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cd ../build |
| 140 |
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\rm * |
| 141 |
dimitri |
1.40 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
| 142 |
dimitri |
1.35 |
make depend |
| 143 |
dimitri |
1.41 |
make -j |
| 144 |
dimitri |
1.35 |
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| 145 |
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cd .. |
| 146 |
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mkdir run |
| 147 |
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cd run |
| 148 |
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\rm * |
| 149 |
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\cp ../input/* . |
| 150 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 151 |
dimitri |
1.41 |
qsub job_altix92_54t |
| 152 |
dimitri |
1.35 |
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| 153 |
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| 154 |
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########################################################################## |
| 155 |
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########################################################################## |
| 156 |
dimitri |
1.41 |
# 510*510*6*50, 216-cpu cube sphere on altix with efc |
| 157 |
dimitri |
1.23 |
# requires input files in sudirectories run_template and ncep_rgau |
| 158 |
dimitri |
1.41 |
# these can be obained from lou:/u/menemenl/cube |
| 159 |
dimitri |
1.23 |
|
| 160 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
| 161 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 162 |
dimitri |
1.41 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
| 163 |
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\cp SIZE.h_216 SIZE.h |
| 164 |
dimitri |
1.23 |
\cp packages.conf_hr packages.conf |
| 165 |
dimitri |
1.8 |
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| 166 |
dimitri |
1.25 |
cd ../build |
| 167 |
dimitri |
1.14 |
\rm * |
| 168 |
dimitri |
1.41 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
| 169 |
dimitri |
1.8 |
make depend |
| 170 |
dimitri |
1.43 |
make -j 16 |
| 171 |
dimitri |
1.8 |
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| 172 |
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cd .. |
| 173 |
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mkdir run |
| 174 |
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cd run |
| 175 |
dimitri |
1.14 |
\rm * |
| 176 |
dimitri |
1.8 |
\cp ../input/* . |
| 177 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 178 |
dimitri |
1.41 |
qsub job_altix92 |
| 179 |
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| 180 |
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| 181 |
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| 182 |
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| 183 |
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| 195 |
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| 197 |
dimitri |
1.42 |
########################################################################## |
| 198 |
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########################################################################## |
| 199 |
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# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc |
| 200 |
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# requires input files in sudirectories run_template and ncep_rgau |
| 201 |
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# presently residing under orion:/tmp1/dmenem/cube |
| 202 |
dimitri |
1.41 |
|
| 203 |
dimitri |
1.42 |
cd MITgcm/verification/global_ocean.cs32x15/code |
| 204 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 205 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
| 206 |
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\cp SIZE.h_54 SIZE.h |
| 207 |
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\cp packages.conf_hr packages.conf |
| 208 |
dimitri |
1.41 |
|
| 209 |
dimitri |
1.42 |
cd ../build |
| 210 |
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\rm * |
| 211 |
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../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
| 212 |
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make depend |
| 213 |
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make -j |
| 214 |
dimitri |
1.41 |
|
| 215 |
dimitri |
1.42 |
cd .. |
| 216 |
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mkdir run |
| 217 |
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cd run |
| 218 |
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\rm * |
| 219 |
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\cp ../input/* . |
| 220 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 221 |
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qsub job_orion |
| 222 |
dimitri |
1.35 |
|
| 223 |
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| 224 |
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########################################################################## |
| 225 |
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########################################################################## |
| 226 |
dimitri |
1.41 |
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc |
| 227 |
dimitri |
1.35 |
# requires input files in sudirectories run_template and ncep_rgau |
| 228 |
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# presently residing under orion:/tmp1/dmenem/cube |
| 229 |
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| 230 |
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cd MITgcm/verification/global_ocean.cs32x15/code |
| 231 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 232 |
dimitri |
1.41 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* . |
| 233 |
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\cp SIZE.h_41 SIZE.h |
| 234 |
dimitri |
1.35 |
\cp packages.conf_hr packages.conf |
| 235 |
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| 236 |
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cd ../build |
| 237 |
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\rm * |
| 238 |
dimitri |
1.41 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
| 239 |
dimitri |
1.35 |
make depend |
| 240 |
dimitri |
1.41 |
make -j |
| 241 |
dimitri |
1.35 |
|
| 242 |
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cd .. |
| 243 |
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mkdir run |
| 244 |
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cd run |
| 245 |
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\rm * |
| 246 |
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\cp ../input/* . |
| 247 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 248 |
dimitri |
1.41 |
qsub job_orion41 |
| 249 |
dimitri |
1.9 |
|
| 250 |
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| 251 |
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########################################################################## |
| 252 |
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########################################################################## |
| 253 |
dimitri |
1.41 |
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc |
| 254 |
dimitri |
1.17 |
# requires input files in sudirectories run_template and ncep_rgau |
| 255 |
dimitri |
1.41 |
# presently residing under orion:/tmp1/dmenem/cube |
| 256 |
dimitri |
1.9 |
|
| 257 |
|
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cd MITgcm/verification/global_ocean.cs32x15/code |
| 258 |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
| 259 |
dimitri |
1.41 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
| 260 |
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\cp SIZE.h_50 SIZE.h |
| 261 |
dimitri |
1.12 |
\cp packages.conf_hr packages.conf |
| 262 |
dimitri |
1.9 |
|
| 263 |
dimitri |
1.25 |
cd ../build |
| 264 |
dimitri |
1.15 |
\rm * |
| 265 |
dimitri |
1.13 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
| 266 |
dimitri |
1.9 |
make depend |
| 267 |
dimitri |
1.41 |
make -j |
| 268 |
dimitri |
1.9 |
|
| 269 |
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cd .. |
| 270 |
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mkdir run |
| 271 |
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cd run |
| 272 |
dimitri |
1.15 |
\rm * |
| 273 |
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\cp ../input/* . |
| 274 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 275 |
dimitri |
1.41 |
qsub job_orion |
| 276 |
dimitri |
1.17 |
|
| 277 |
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| 278 |
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########################################################################## |
| 279 |
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########################################################################## |
| 280 |
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# matlab script for generating pChkptFreq |
| 281 |
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| 282 |
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nTimeSteps=26352; |
| 283 |
dimitri |
1.34 |
for niter0=216:26352:(26352*12) |
| 284 |
dimitri |
1.17 |
pChkptFreq=(niter0+nTimeSteps)*1200; |
| 285 |
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day=pChkptFreq/24/60/60; |
| 286 |
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disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ... |
| 287 |
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datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)]) |
| 288 |
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end |
| 289 |
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| 290 |
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niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600 |
| 291 |
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niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000 |
| 292 |
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niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400 |
| 293 |
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niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800 |
| 294 |
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niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200 |
| 295 |
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niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600 |
| 296 |
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niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000 |
| 297 |
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niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400 |
| 298 |
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niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800 |
| 299 |
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niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200 |
| 300 |
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niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600 |
| 301 |
dimitri |
1.34 |
niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000 |
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