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Revision 1.40 - (hide annotations) (download)
Thu Jul 1 03:52:24 2004 UTC (19 years, 11 months ago) by dimitri
Branch: MAIN
Changes since 1.39: +1 -2 lines 
Modified high_res_cube/README_ice and input/data_hr93_newIO
1 dimitri 1.1 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.36 Date last tested: March 28, 2004.
3 dimitri 1.32 Code and input used for integrating cube5.
4 dimitri 1.8
5    
6     ##########################################################################
7     ##########################################################################
8 dimitri 1.14 # getting the code from anonymous CVS server
9 dimitri 1.1
10 dimitri 1.38 cvs co MITgcm_contrib/high_res_cube/README_ice
11     cvs co MITgcm_contrib/high_res_cube/code-mods
12     cvs co MITgcm_contrib/high_res_cube/input
13     cvs co MITgcm_contrib/high_res_cube/results
14     cvs co MITgcm_contrib/edge_problem
15     cvs co MITgcm_code
16     cvs co MITgcm/verification/global_ocean.cs32x15
17 dimitri 1.39 cvs co MITgcm/verification/testreport
18 dimitri 1.14
19    
20     ##########################################################################
21     ##########################################################################
22     # 32*32*6*15, 1-cpu cube sphere
23 dimitri 1.3
24 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
25 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
26 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
27 dimitri 1.37 cd ../build
28     \rm *
29     ../../../tools/genmake2 -mods=../code
30     make depend
31     make
32     cd ..
33     mkdir run
34     cd run
35     \rm *
36     \cp ../input/* .
37     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
38     ../build/mitgcmuv >& output.txt
39 dimitri 1.3
40 dimitri 1.37 comparison output is in:
41     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
42    
43     to use matlab to look at the output
44     matlab
45    
46     for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
47     tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49     end
50    
51     heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
52     mask=0*heff; mask(find(heff>.001))=1;
53     uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
54     vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
55     clf
56     subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
57     subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
58     subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
59     subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
60    
61    
62     ##########################################################################
63     ##########################################################################
64     # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
65    
66     cd MITgcm/verification/global_ocean.cs32x15/code
67     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68     \cp ../code_alt/code.176t_8x4/* .
69 dimitri 1.25 cd ../build
70 dimitri 1.37 \rm *
71 dimitri 1.10 ../../../tools/genmake2 -mods=../code
72 dimitri 1.1 make depend
73     make
74     cd ..
75     mkdir run
76     cd run
77 dimitri 1.37 \rm *
78 dimitri 1.8 \cp ../input/* .
79     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
80 dimitri 1.3 ../build/mitgcmuv >& output.txt
81    
82     comparison output is in:
83     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
84    
85     to use matlab to look at the output
86     matlab
87 dimitri 1.17
88 dimitri 1.5 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
89 dimitri 1.13 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
90 dimitri 1.4 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
91     end
92 dimitri 1.8
93 dimitri 1.17 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
94     mask=0*heff; mask(find(heff>.001))=1;
95     uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
96     vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
97     clf
98     subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
99     subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
100     subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
101     subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
102    
103 dimitri 1.8
104     ##########################################################################
105     ##########################################################################
106     # 32*32*6*15, 2-cpu cube sphere on the altices with efc
107    
108     cd MITgcm/verification/global_ocean.cs32x15/code
109     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
110 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
111 dimitri 1.8 \cp SIZE.h_mpi SIZE.h
112    
113 dimitri 1.25 cd ../build
114 dimitri 1.14 \rm *
115 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
116 dimitri 1.8 make depend
117     make
118    
119     cd ..
120     mkdir run
121     cd run
122 dimitri 1.14 \rm *
123 dimitri 1.8 \cp ../input/* .
124     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
125     mpirun -np 2 ../build/mitgcmuv
126    
127    
128     ##########################################################################
129     ##########################################################################
130 dimitri 1.35 # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
131 dimitri 1.14 # requires input files in sudirectories run_template and ncep_rgau
132     # presently residing under orion:/tmp1/dmenem/cube
133 dimitri 1.8
134     cd MITgcm/verification/global_ocean.cs32x15/code
135     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
136     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
137     \cp SIZE.h_54 SIZE.h
138 dimitri 1.11 \cp packages.conf_hr packages.conf
139 dimitri 1.23
140 dimitri 1.25 cd ../build
141 dimitri 1.23 \rm *
142     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
143     make depend
144     make
145    
146     cd ..
147     mkdir run
148     cd run
149     \rm *
150     \cp ../input/* .
151     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
152     qsub job_orion
153    
154    
155     ##########################################################################
156     ##########################################################################
157 dimitri 1.35 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
158 dimitri 1.36 # starting with pickup file from end of 1992
159 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
160    
161     cd MITgcm/verification/global_ocean.cs32x15/code
162     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
163     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
164     \cp packages.conf_hr packages.conf
165    
166     cd ../build
167     \rm *
168 dimitri 1.40 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
169 dimitri 1.35 make depend
170     make
171    
172     cd ..
173     mkdir run
174     cd run
175     \rm *
176     \cp ../input/* .
177     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
178 dimitri 1.36 qsub job_altix93_newIO
179 dimitri 1.35
180    
181     ##########################################################################
182     ##########################################################################
183 dimitri 1.23 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
184     # requires input files in sudirectories run_template and ncep_rgau
185     # presently residing under orion:/tmp1/dmenem/cube
186    
187     cd MITgcm/verification/global_ocean.cs32x15/code
188     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
189     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
190     \cp SIZE.h_41 SIZE.h
191     \cp packages.conf_hr packages.conf
192 dimitri 1.8
193 dimitri 1.25 cd ../build
194 dimitri 1.14 \rm *
195 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
196 dimitri 1.8 make depend
197     make
198    
199     cd ..
200     mkdir run
201     cd run
202 dimitri 1.14 \rm *
203 dimitri 1.8 \cp ../input/* .
204     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
205 dimitri 1.24 qsub job_orion41
206 dimitri 1.35
207    
208     ##########################################################################
209     ##########################################################################
210     # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
211     # requires input files in sudirectories run_template and ncep_rgau
212     # presently residing under orion:/tmp1/dmenem/cube
213    
214     cd MITgcm/verification/global_ocean.cs32x15/code
215     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
216     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
217     \cp SIZE.h_50 SIZE.h
218     \cp packages.conf_hr packages.conf
219    
220     cd ../build
221     \rm *
222     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
223     make depend
224     make
225    
226     cd ..
227     mkdir run
228     cd run
229     \rm *
230     \cp ../input/* .
231     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
232     qsub job_orion
233 dimitri 1.9
234    
235     ##########################################################################
236     ##########################################################################
237 dimitri 1.13 # 510*510*6*50, 216-cpu cube sphere on altix with efc
238 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
239     # these can be obained from lou:/u/menemenl/cube
240 dimitri 1.9
241     cd MITgcm/verification/global_ocean.cs32x15/code
242     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
243     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
244     \cp SIZE.h_216 SIZE.h
245 dimitri 1.12 \cp packages.conf_hr packages.conf
246 dimitri 1.9
247 dimitri 1.25 cd ../build
248 dimitri 1.15 \rm *
249 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
250 dimitri 1.9 make depend
251     make
252    
253     cd ..
254     mkdir run
255     cd run
256 dimitri 1.15 \rm *
257     \cp ../input/* .
258     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
259 dimitri 1.29 qsub job_altix
260 dimitri 1.17
261    
262     ##########################################################################
263     ##########################################################################
264     # matlab script for generating pChkptFreq
265    
266     nTimeSteps=26352;
267 dimitri 1.34 for niter0=216:26352:(26352*12)
268 dimitri 1.17 pChkptFreq=(niter0+nTimeSteps)*1200;
269     day=pChkptFreq/24/60/60;
270     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
271     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
272     end
273    
274     niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
275     niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
276     niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
277     niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
278     niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
279     niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
280     niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
281     niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
282     niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
283     niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
284     niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
285 dimitri 1.34 niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
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