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Revision 1.38 - (hide annotations) (download)
Sun Jun 27 21:05:37 2004 UTC (21 years ago) by dimitri
Branch: MAIN
Changes since 1.37: +7 -8 lines 
Modified Files:	edge_problem/readme.txt high_res_cube/README_ice
1 dimitri 1.1 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.36 Date last tested: March 28, 2004.
3 dimitri 1.32 Code and input used for integrating cube5.
4 dimitri 1.8
5    
6     ##########################################################################
7     ##########################################################################
8 dimitri 1.14 # getting the code from anonymous CVS server
9 dimitri 1.1
10 dimitri 1.38 cvs co MITgcm_contrib/high_res_cube/README_ice
11     cvs co MITgcm_contrib/high_res_cube/code-mods
12     cvs co MITgcm_contrib/high_res_cube/input
13     cvs co MITgcm_contrib/high_res_cube/results
14     cvs co MITgcm_contrib/edge_problem
15     cvs co MITgcm_code
16     cvs co MITgcm/verification/global_ocean.cs32x15
17 dimitri 1.14
18    
19     ##########################################################################
20     ##########################################################################
21     # 32*32*6*15, 1-cpu cube sphere
22 dimitri 1.3
23 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
24 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
25 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
26 dimitri 1.37 cd ../build
27     \rm *
28     ../../../tools/genmake2 -mods=../code
29     make depend
30     make
31     cd ..
32     mkdir run
33     cd run
34     \rm *
35     \cp ../input/* .
36     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
37     ../build/mitgcmuv >& output.txt
38 dimitri 1.3
39 dimitri 1.37 comparison output is in:
40     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
41    
42     to use matlab to look at the output
43     matlab
44    
45     for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
46     tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
47     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
48     end
49    
50     heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
51     mask=0*heff; mask(find(heff>.001))=1;
52     uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
53     vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
54     clf
55     subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
56     subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
57     subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
58     subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
59    
60    
61     ##########################################################################
62     ##########################################################################
63     # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
64    
65     cd MITgcm/verification/global_ocean.cs32x15/code
66     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
67     \cp ../code_alt/code.176t_8x4/* .
68 dimitri 1.25 cd ../build
69 dimitri 1.37 \rm *
70 dimitri 1.10 ../../../tools/genmake2 -mods=../code
71 dimitri 1.1 make depend
72     make
73     cd ..
74     mkdir run
75     cd run
76 dimitri 1.37 \rm *
77 dimitri 1.8 \cp ../input/* .
78     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79 dimitri 1.3 ../build/mitgcmuv >& output.txt
80    
81     comparison output is in:
82     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
83    
84     to use matlab to look at the output
85     matlab
86 dimitri 1.17
87 dimitri 1.5 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
88 dimitri 1.13 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
89 dimitri 1.4 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
90     end
91 dimitri 1.8
92 dimitri 1.17 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
93     mask=0*heff; mask(find(heff>.001))=1;
94     uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
95     vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
96     clf
97     subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
98     subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
99     subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
100     subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
101    
102 dimitri 1.8
103     ##########################################################################
104     ##########################################################################
105     # 32*32*6*15, 2-cpu cube sphere on the altices with efc
106    
107     cd MITgcm/verification/global_ocean.cs32x15/code
108     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
109 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
110 dimitri 1.8 \cp SIZE.h_mpi SIZE.h
111    
112 dimitri 1.25 cd ../build
113 dimitri 1.14 \rm *
114 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
115 dimitri 1.8 make depend
116     make
117    
118     cd ..
119     mkdir run
120     cd run
121 dimitri 1.14 \rm *
122 dimitri 1.8 \cp ../input/* .
123     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
124     mpirun -np 2 ../build/mitgcmuv
125    
126    
127     ##########################################################################
128     ##########################################################################
129 dimitri 1.35 # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
130 dimitri 1.14 # requires input files in sudirectories run_template and ncep_rgau
131     # presently residing under orion:/tmp1/dmenem/cube
132 dimitri 1.8
133     cd MITgcm/verification/global_ocean.cs32x15/code
134     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
135     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
136     \cp SIZE.h_54 SIZE.h
137 dimitri 1.11 \cp packages.conf_hr packages.conf
138 dimitri 1.23
139 dimitri 1.25 cd ../build
140 dimitri 1.23 \rm *
141     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
142     make depend
143     make
144    
145     cd ..
146     mkdir run
147     cd run
148     \rm *
149     \cp ../input/* .
150     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
151     qsub job_orion
152    
153    
154     ##########################################################################
155     ##########################################################################
156 dimitri 1.35 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
157 dimitri 1.36 # starting with pickup file from end of 1992
158 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
159     # presently residing under orion:/tmp1/dmenem/cube
160    
161     cd MITgcm/verification/global_ocean.cs32x15/code
162     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
163     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
164     \cp packages.conf_hr packages.conf
165    
166     cd ../build
167     \rm *
168     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
169     make depend
170     make
171    
172     cd ..
173     mkdir run
174     cd run
175     \rm *
176     \cp ../input/* .
177     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
178 dimitri 1.36 qsub job_altix93_newIO
179 dimitri 1.35
180    
181     ##########################################################################
182     ##########################################################################
183 dimitri 1.23 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
184     # requires input files in sudirectories run_template and ncep_rgau
185     # presently residing under orion:/tmp1/dmenem/cube
186    
187     cd MITgcm/verification/global_ocean.cs32x15/code
188     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
189     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
190     \cp SIZE.h_41 SIZE.h
191     \cp packages.conf_hr packages.conf
192 dimitri 1.8
193 dimitri 1.25 cd ../build
194 dimitri 1.14 \rm *
195 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
196 dimitri 1.8 make depend
197     make
198    
199     cd ..
200     mkdir run
201     cd run
202 dimitri 1.14 \rm *
203 dimitri 1.8 \cp ../input/* .
204     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
205 dimitri 1.24 qsub job_orion41
206 dimitri 1.35
207    
208     ##########################################################################
209     ##########################################################################
210     # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
211     # requires input files in sudirectories run_template and ncep_rgau
212     # presently residing under orion:/tmp1/dmenem/cube
213    
214     cd MITgcm/verification/global_ocean.cs32x15/code
215     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
216     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
217     \cp SIZE.h_50 SIZE.h
218     \cp packages.conf_hr packages.conf
219    
220     cd ../build
221     \rm *
222     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
223     make depend
224     make
225    
226     cd ..
227     mkdir run
228     cd run
229     \rm *
230     \cp ../input/* .
231     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
232     qsub job_orion
233 dimitri 1.9
234    
235     ##########################################################################
236     ##########################################################################
237 dimitri 1.13 # 510*510*6*50, 216-cpu cube sphere on altix with efc
238 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
239     # these can be obained from lou:/u/menemenl/cube
240 dimitri 1.9
241     cd MITgcm/verification/global_ocean.cs32x15/code
242     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
243     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
244     \cp SIZE.h_216 SIZE.h
245 dimitri 1.12 \cp packages.conf_hr packages.conf
246 dimitri 1.9
247 dimitri 1.25 cd ../build
248 dimitri 1.15 \rm *
249 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
250 dimitri 1.9 make depend
251     make
252    
253     cd ..
254     mkdir run
255     cd run
256 dimitri 1.15 \rm *
257     \cp ../input/* .
258     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
259 dimitri 1.29 qsub job_altix
260 dimitri 1.17
261    
262     ##########################################################################
263     ##########################################################################
264     # matlab script for generating pChkptFreq
265    
266     nTimeSteps=26352;
267 dimitri 1.34 for niter0=216:26352:(26352*12)
268 dimitri 1.17 pChkptFreq=(niter0+nTimeSteps)*1200;
269     day=pChkptFreq/24/60/60;
270     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
271     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
272     end
273    
274     niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
275     niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
276     niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
277     niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
278     niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
279     niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
280     niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
281     niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
282     niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
283     niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
284     niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
285 dimitri 1.34 niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
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