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Revision 1.37 - (hide annotations) (download)
Tue May 11 04:03:55 2004 UTC (21 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.36: +43 -1 lines 
Modified high_res_cube/README_ice and high_res_cube/input/job_altix
1 dimitri 1.1 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.36 Date last tested: March 28, 2004.
3 dimitri 1.32 Code and input used for integrating cube5.
4 dimitri 1.8
5    
6     ##########################################################################
7     ##########################################################################
8 dimitri 1.14 # getting the code from anonymous CVS server
9 dimitri 1.1
10     setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
11     cvs login ( CVS password: cvsanon )
12 dimitri 1.32 cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice
13     cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods
14     cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input
15     cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results
16     cvs co -r hrcube5 MITgcm_code
17     cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15
18 dimitri 1.14
19    
20     ##########################################################################
21     ##########################################################################
22     # 32*32*6*15, 1-cpu cube sphere
23 dimitri 1.3
24 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
25 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
26 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
27 dimitri 1.37 cd ../build
28     \rm *
29     ../../../tools/genmake2 -mods=../code
30     make depend
31     make
32     cd ..
33     mkdir run
34     cd run
35     \rm *
36     \cp ../input/* .
37     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
38     ../build/mitgcmuv >& output.txt
39 dimitri 1.3
40 dimitri 1.37 comparison output is in:
41     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
42    
43     to use matlab to look at the output
44     matlab
45    
46     for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
47     tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49     end
50    
51     heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
52     mask=0*heff; mask(find(heff>.001))=1;
53     uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
54     vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
55     clf
56     subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
57     subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
58     subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
59     subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
60    
61    
62     ##########################################################################
63     ##########################################################################
64     # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
65    
66     cd MITgcm/verification/global_ocean.cs32x15/code
67     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68     \cp ../code_alt/code.176t_8x4/* .
69 dimitri 1.25 cd ../build
70 dimitri 1.37 \rm *
71 dimitri 1.10 ../../../tools/genmake2 -mods=../code
72 dimitri 1.1 make depend
73     make
74     cd ..
75     mkdir run
76     cd run
77 dimitri 1.37 \rm *
78 dimitri 1.8 \cp ../input/* .
79     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
80 dimitri 1.3 ../build/mitgcmuv >& output.txt
81    
82     comparison output is in:
83     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
84    
85     to use matlab to look at the output
86     matlab
87 dimitri 1.17
88 dimitri 1.5 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
89 dimitri 1.13 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
90 dimitri 1.4 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
91     end
92 dimitri 1.8
93 dimitri 1.17 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
94     mask=0*heff; mask(find(heff>.001))=1;
95     uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
96     vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
97     clf
98     subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
99     subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
100     subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
101     subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
102    
103 dimitri 1.8
104     ##########################################################################
105     ##########################################################################
106     # 32*32*6*15, 2-cpu cube sphere on the altices with efc
107    
108     cd MITgcm/verification/global_ocean.cs32x15/code
109     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
110 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
111 dimitri 1.8 \cp SIZE.h_mpi SIZE.h
112    
113 dimitri 1.25 cd ../build
114 dimitri 1.14 \rm *
115 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
116 dimitri 1.8 make depend
117     make
118    
119     cd ..
120     mkdir run
121     cd run
122 dimitri 1.14 \rm *
123 dimitri 1.8 \cp ../input/* .
124     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
125     mpirun -np 2 ../build/mitgcmuv
126    
127    
128     ##########################################################################
129     ##########################################################################
130 dimitri 1.35 # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
131 dimitri 1.14 # requires input files in sudirectories run_template and ncep_rgau
132     # presently residing under orion:/tmp1/dmenem/cube
133 dimitri 1.8
134     cd MITgcm/verification/global_ocean.cs32x15/code
135     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
136     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
137     \cp SIZE.h_54 SIZE.h
138 dimitri 1.11 \cp packages.conf_hr packages.conf
139 dimitri 1.23
140 dimitri 1.25 cd ../build
141 dimitri 1.23 \rm *
142     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
143     make depend
144     make
145    
146     cd ..
147     mkdir run
148     cd run
149     \rm *
150     \cp ../input/* .
151     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
152     qsub job_orion
153    
154    
155     ##########################################################################
156     ##########################################################################
157 dimitri 1.35 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
158 dimitri 1.36 # starting with pickup file from end of 1992
159 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
160     # presently residing under orion:/tmp1/dmenem/cube
161    
162     cd MITgcm/verification/global_ocean.cs32x15/code
163     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
164     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
165     \cp packages.conf_hr packages.conf
166    
167     cd ../build
168     \rm *
169     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
170     make depend
171     make
172    
173     cd ..
174     mkdir run
175     cd run
176     \rm *
177     \cp ../input/* .
178     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
179 dimitri 1.36 qsub job_altix93_newIO
180 dimitri 1.35
181    
182     ##########################################################################
183     ##########################################################################
184 dimitri 1.23 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
185     # requires input files in sudirectories run_template and ncep_rgau
186     # presently residing under orion:/tmp1/dmenem/cube
187    
188     cd MITgcm/verification/global_ocean.cs32x15/code
189     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
190     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
191     \cp SIZE.h_41 SIZE.h
192     \cp packages.conf_hr packages.conf
193 dimitri 1.8
194 dimitri 1.25 cd ../build
195 dimitri 1.14 \rm *
196 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
197 dimitri 1.8 make depend
198     make
199    
200     cd ..
201     mkdir run
202     cd run
203 dimitri 1.14 \rm *
204 dimitri 1.8 \cp ../input/* .
205     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
206 dimitri 1.24 qsub job_orion41
207 dimitri 1.35
208    
209     ##########################################################################
210     ##########################################################################
211     # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
212     # requires input files in sudirectories run_template and ncep_rgau
213     # presently residing under orion:/tmp1/dmenem/cube
214    
215     cd MITgcm/verification/global_ocean.cs32x15/code
216     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
217     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
218     \cp SIZE.h_50 SIZE.h
219     \cp packages.conf_hr packages.conf
220    
221     cd ../build
222     \rm *
223     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
224     make depend
225     make
226    
227     cd ..
228     mkdir run
229     cd run
230     \rm *
231     \cp ../input/* .
232     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
233     qsub job_orion
234 dimitri 1.9
235    
236     ##########################################################################
237     ##########################################################################
238 dimitri 1.13 # 510*510*6*50, 216-cpu cube sphere on altix with efc
239 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
240     # these can be obained from lou:/u/menemenl/cube
241 dimitri 1.9
242     cd MITgcm/verification/global_ocean.cs32x15/code
243     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
244     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
245     \cp SIZE.h_216 SIZE.h
246 dimitri 1.12 \cp packages.conf_hr packages.conf
247 dimitri 1.9
248 dimitri 1.25 cd ../build
249 dimitri 1.15 \rm *
250 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
251 dimitri 1.9 make depend
252     make
253    
254     cd ..
255     mkdir run
256     cd run
257 dimitri 1.15 \rm *
258     \cp ../input/* .
259     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
260 dimitri 1.29 qsub job_altix
261 dimitri 1.17
262    
263     ##########################################################################
264     ##########################################################################
265     # matlab script for generating pChkptFreq
266    
267     nTimeSteps=26352;
268 dimitri 1.34 for niter0=216:26352:(26352*12)
269 dimitri 1.17 pChkptFreq=(niter0+nTimeSteps)*1200;
270     day=pChkptFreq/24/60/60;
271     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
272     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
273     end
274    
275     niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
276     niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
277     niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
278     niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
279     niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
280     niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
281     niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
282     niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
283     niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
284     niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
285     niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
286 dimitri 1.34 niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
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