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Revision 1.36 - (hide annotations) (download)
Sun Mar 28 09:28:21 2004 UTC (21 years, 3 months ago) by dimitri
Branch: MAIN
Changes since 1.35: +3 -2 lines 
Modified MITgcm_contrib for 54-cpu, 54-tile configuration.
1 dimitri 1.1 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.36 Date last tested: March 28, 2004.
3 dimitri 1.32 Code and input used for integrating cube5.
4 dimitri 1.8
5    
6     ##########################################################################
7     ##########################################################################
8 dimitri 1.14 # getting the code from anonymous CVS server
9 dimitri 1.1
10     setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
11     cvs login ( CVS password: cvsanon )
12 dimitri 1.32 cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice
13     cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods
14     cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input
15     cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results
16     cvs co -r hrcube5 MITgcm_code
17     cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15
18 dimitri 1.14
19    
20     ##########################################################################
21     ##########################################################################
22     # 32*32*6*15, 1-cpu cube sphere
23 dimitri 1.3
24 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
25 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
26 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
27 dimitri 1.3
28 dimitri 1.25 cd ../build
29 dimitri 1.10 ../../../tools/genmake2 -mods=../code
30 dimitri 1.1 make depend
31     make
32 dimitri 1.3
33 dimitri 1.1 cd ..
34     mkdir run
35     cd run
36 dimitri 1.8 \cp ../input/* .
37     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
38 dimitri 1.3 ../build/mitgcmuv >& output.txt
39    
40     comparison output is in:
41     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
42    
43     to use matlab to look at the output
44     matlab
45 dimitri 1.17
46 dimitri 1.5 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
47 dimitri 1.13 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48 dimitri 1.4 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49     end
50 dimitri 1.8
51 dimitri 1.17 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
52     mask=0*heff; mask(find(heff>.001))=1;
53     uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
54     vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
55     clf
56     subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
57     subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
58     subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
59     subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
60    
61 dimitri 1.8
62     ##########################################################################
63     ##########################################################################
64     # 32*32*6*15, 2-cpu cube sphere on the altices with efc
65    
66     cd MITgcm/verification/global_ocean.cs32x15/code
67     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
69 dimitri 1.8 \cp SIZE.h_mpi SIZE.h
70    
71 dimitri 1.25 cd ../build
72 dimitri 1.14 \rm *
73 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
74 dimitri 1.8 make depend
75     make
76    
77     cd ..
78     mkdir run
79     cd run
80 dimitri 1.14 \rm *
81 dimitri 1.8 \cp ../input/* .
82     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
83     mpirun -np 2 ../build/mitgcmuv
84    
85    
86     ##########################################################################
87     ##########################################################################
88 dimitri 1.35 # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
89 dimitri 1.14 # requires input files in sudirectories run_template and ncep_rgau
90     # presently residing under orion:/tmp1/dmenem/cube
91 dimitri 1.8
92     cd MITgcm/verification/global_ocean.cs32x15/code
93     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
94     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
95     \cp SIZE.h_54 SIZE.h
96 dimitri 1.11 \cp packages.conf_hr packages.conf
97 dimitri 1.23
98 dimitri 1.25 cd ../build
99 dimitri 1.23 \rm *
100     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
101     make depend
102     make
103    
104     cd ..
105     mkdir run
106     cd run
107     \rm *
108     \cp ../input/* .
109     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
110     qsub job_orion
111    
112    
113     ##########################################################################
114     ##########################################################################
115 dimitri 1.35 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
116 dimitri 1.36 # starting with pickup file from end of 1992
117 dimitri 1.35 # requires input files in sudirectories run_template and ncep_rgau
118     # presently residing under orion:/tmp1/dmenem/cube
119    
120     cd MITgcm/verification/global_ocean.cs32x15/code
121     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
122     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
123     \cp packages.conf_hr packages.conf
124    
125     cd ../build
126     \rm *
127     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
128     make depend
129     make
130    
131     cd ..
132     mkdir run
133     cd run
134     \rm *
135     \cp ../input/* .
136     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
137 dimitri 1.36 qsub job_altix93_newIO
138 dimitri 1.35
139    
140     ##########################################################################
141     ##########################################################################
142 dimitri 1.23 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
143     # requires input files in sudirectories run_template and ncep_rgau
144     # presently residing under orion:/tmp1/dmenem/cube
145    
146     cd MITgcm/verification/global_ocean.cs32x15/code
147     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
148     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
149     \cp SIZE.h_41 SIZE.h
150     \cp packages.conf_hr packages.conf
151 dimitri 1.8
152 dimitri 1.25 cd ../build
153 dimitri 1.14 \rm *
154 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
155 dimitri 1.8 make depend
156     make
157    
158     cd ..
159     mkdir run
160     cd run
161 dimitri 1.14 \rm *
162 dimitri 1.8 \cp ../input/* .
163     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
164 dimitri 1.24 qsub job_orion41
165 dimitri 1.35
166    
167     ##########################################################################
168     ##########################################################################
169     # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
170     # requires input files in sudirectories run_template and ncep_rgau
171     # presently residing under orion:/tmp1/dmenem/cube
172    
173     cd MITgcm/verification/global_ocean.cs32x15/code
174     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
175     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
176     \cp SIZE.h_50 SIZE.h
177     \cp packages.conf_hr packages.conf
178    
179     cd ../build
180     \rm *
181     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
182     make depend
183     make
184    
185     cd ..
186     mkdir run
187     cd run
188     \rm *
189     \cp ../input/* .
190     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
191     qsub job_orion
192 dimitri 1.9
193    
194     ##########################################################################
195     ##########################################################################
196 dimitri 1.13 # 510*510*6*50, 216-cpu cube sphere on altix with efc
197 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
198     # these can be obained from lou:/u/menemenl/cube
199 dimitri 1.9
200     cd MITgcm/verification/global_ocean.cs32x15/code
201     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
202     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
203     \cp SIZE.h_216 SIZE.h
204 dimitri 1.12 \cp packages.conf_hr packages.conf
205 dimitri 1.9
206 dimitri 1.25 cd ../build
207 dimitri 1.15 \rm *
208 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
209 dimitri 1.9 make depend
210     make
211    
212     cd ..
213     mkdir run
214     cd run
215 dimitri 1.15 \rm *
216     \cp ../input/* .
217     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
218 dimitri 1.29 qsub job_altix
219 dimitri 1.17
220    
221     ##########################################################################
222     ##########################################################################
223     # matlab script for generating pChkptFreq
224    
225     nTimeSteps=26352;
226 dimitri 1.34 for niter0=216:26352:(26352*12)
227 dimitri 1.17 pChkptFreq=(niter0+nTimeSteps)*1200;
228     day=pChkptFreq/24/60/60;
229     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
230     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
231     end
232    
233     niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
234     niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
235     niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
236     niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
237     niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
238     niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
239     niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
240     niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
241     niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
242     niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
243     niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
244 dimitri 1.34 niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
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