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Revision 1.33 - (hide annotations) (download)
Tue Mar 16 17:20:07 2004 UTC (20 years, 2 months ago) by dimitri
Branch: MAIN
Changes since 1.32: +2 -2 lines 
high_res_cube/code-mods/s12t_16x32 moved to MITgcm/utils/exch2/code-mods
1 dimitri 1.1 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.32 Date last tested: March 9, 2004.
3     Code and input used for integrating cube5.
4 dimitri 1.8
5    
6     ##########################################################################
7     ##########################################################################
8 dimitri 1.14 # getting the code from anonymous CVS server
9 dimitri 1.1
10     setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
11     cvs login ( CVS password: cvsanon )
12 dimitri 1.32 cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice
13     cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods
14     cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input
15     cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results
16     cvs co -r hrcube5 MITgcm_code
17     cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15
18 dimitri 1.14
19    
20     ##########################################################################
21     ##########################################################################
22     # 32*32*6*15, 1-cpu cube sphere
23 dimitri 1.3
24 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
25 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
26 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
27 dimitri 1.3
28 dimitri 1.25 cd ../build
29 dimitri 1.10 ../../../tools/genmake2 -mods=../code
30 dimitri 1.1 make depend
31 dimitri 1.31 \rm getcon.F
32 dimitri 1.1 make
33 dimitri 1.3
34 dimitri 1.1 cd ..
35     mkdir run
36     cd run
37 dimitri 1.8 \cp ../input/* .
38     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
39 dimitri 1.3 ../build/mitgcmuv >& output.txt
40    
41     comparison output is in:
42     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
43    
44     to use matlab to look at the output
45     matlab
46 dimitri 1.17
47 dimitri 1.5 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
48 dimitri 1.13 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
49 dimitri 1.4 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
50     end
51 dimitri 1.8
52 dimitri 1.17 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
53     mask=0*heff; mask(find(heff>.001))=1;
54     uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
55     vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
56     clf
57     subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
58     subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
59     subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
60     subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
61    
62 dimitri 1.8
63     ##########################################################################
64     ##########################################################################
65     # 32*32*6*15, 2-cpu cube sphere on the altices with efc
66    
67     cd MITgcm/verification/global_ocean.cs32x15/code
68     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
69 dimitri 1.33 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
70 dimitri 1.8 \cp SIZE.h_mpi SIZE.h
71    
72 dimitri 1.25 cd ../build
73 dimitri 1.14 \rm *
74 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
75 dimitri 1.8 make depend
76 dimitri 1.31 \rm getcon.F
77 dimitri 1.8 make
78    
79     cd ..
80     mkdir run
81     cd run
82 dimitri 1.14 \rm *
83 dimitri 1.8 \cp ../input/* .
84     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
85     mpirun -np 2 ../build/mitgcmuv
86    
87    
88     ##########################################################################
89     ##########################################################################
90 dimitri 1.9 # 510*510*6*50, 54-cpu cube sphere on the altices with efc
91 dimitri 1.14 # requires input files in sudirectories run_template and ncep_rgau
92     # presently residing under orion:/tmp1/dmenem/cube
93 dimitri 1.8
94     cd MITgcm/verification/global_ocean.cs32x15/code
95     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
96     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
97     \cp SIZE.h_54 SIZE.h
98 dimitri 1.11 \cp packages.conf_hr packages.conf
99 dimitri 1.23
100 dimitri 1.25 cd ../build
101 dimitri 1.23 \rm *
102     ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
103     make depend
104 dimitri 1.31 \rm getcon.F
105 dimitri 1.23 make
106    
107     cd ..
108     mkdir run
109     cd run
110     \rm *
111     \cp ../input/* .
112     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
113     qsub job_orion
114    
115    
116     ##########################################################################
117     ##########################################################################
118     # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
119     # requires input files in sudirectories run_template and ncep_rgau
120     # presently residing under orion:/tmp1/dmenem/cube
121    
122     cd MITgcm/verification/global_ocean.cs32x15/code
123     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
124     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
125     \cp SIZE.h_41 SIZE.h
126     \cp packages.conf_hr packages.conf
127 dimitri 1.8
128 dimitri 1.25 cd ../build
129 dimitri 1.14 \rm *
130 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
131 dimitri 1.8 make depend
132 dimitri 1.31 \rm getcon.F
133 dimitri 1.8 make
134    
135     cd ..
136     mkdir run
137     cd run
138 dimitri 1.14 \rm *
139 dimitri 1.8 \cp ../input/* .
140     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
141 dimitri 1.24 qsub job_orion41
142 dimitri 1.9
143    
144     ##########################################################################
145     ##########################################################################
146 dimitri 1.13 # 510*510*6*50, 216-cpu cube sphere on altix with efc
147 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
148     # these can be obained from lou:/u/menemenl/cube
149 dimitri 1.9
150     cd MITgcm/verification/global_ocean.cs32x15/code
151     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
152     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
153     \cp SIZE.h_216 SIZE.h
154 dimitri 1.12 \cp packages.conf_hr packages.conf
155 dimitri 1.9
156 dimitri 1.25 cd ../build
157 dimitri 1.15 \rm *
158 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
159 dimitri 1.9 make depend
160 dimitri 1.31 \rm getcon.F
161 dimitri 1.9 make
162    
163     cd ..
164     mkdir run
165     cd run
166 dimitri 1.15 \rm *
167     \cp ../input/* .
168     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
169 dimitri 1.29 qsub job_altix
170 dimitri 1.17
171    
172     ##########################################################################
173     ##########################################################################
174     # matlab script for generating pChkptFreq
175    
176     nTimeSteps=26352;
177     for niter0=216:26352:(26352*11)
178     pChkptFreq=(niter0+nTimeSteps)*1200;
179     day=pChkptFreq/24/60/60;
180     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
181     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
182     end
183    
184     niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
185     niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
186     niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
187     niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
188     niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
189     niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
190     niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
191     niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
192     niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
193     niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
194     niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
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