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Revision 1.22 - (hide annotations) (download)
Fri Feb 6 21:12:01 2004 UTC (21 years, 5 months ago) by dimitri
Branch: MAIN
Changes since 1.21: +0 -3 lines 
removed files that have been ported to pkg/exch2
added tile configuration with missing tiles
1 dimitri 1.1 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.20 Date last tested: January 24, 2004.
3 dimitri 1.21 This is the code used for cube2, the second 1992-2002 510x510x6
4 dimitri 1.14 cube-sphere integration.
5 dimitri 1.8
6    
7     ##########################################################################
8     ##########################################################################
9 dimitri 1.14 # getting the code from anonymous CVS server
10 dimitri 1.1
11     setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
12     cvs login ( CVS password: cvsanon )
13 dimitri 1.20 cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/README_ice
14     cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/code-mods
15     cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/matlab-grid-converter
16     cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/input
17     cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/results
18     cvs co -r hrcube_2 MITgcm_code
19     cvs co -r hrcube_2 MITgcm/verification/global_ocean.cs32x15
20 dimitri 1.14
21    
22     ##########################################################################
23     ##########################################################################
24     # 32*32*6*15, 1-cpu cube sphere
25 dimitri 1.3
26 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
27 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
28     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
29 dimitri 1.3
30 dimitri 1.2 cd ..
31     mkdir build
32     cd build
33 dimitri 1.10 ../../../tools/genmake2 -mods=../code
34 dimitri 1.1 make depend
35     make
36 dimitri 1.3
37 dimitri 1.1 cd ..
38     mkdir run
39     cd run
40 dimitri 1.8 \cp ../input/* .
41     \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
42     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
43 dimitri 1.3 ../build/mitgcmuv >& output.txt
44    
45     comparison output is in:
46     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
47    
48     to use matlab to look at the output
49     matlab
50 dimitri 1.17
51 dimitri 1.5 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
52 dimitri 1.13 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
53 dimitri 1.4 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
54     end
55 dimitri 1.8
56 dimitri 1.17 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
57     mask=0*heff; mask(find(heff>.001))=1;
58     uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
59     vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
60     clf
61     subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
62     subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
63     subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
64     subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
65    
66 dimitri 1.8
67     ##########################################################################
68     ##########################################################################
69     # 32*32*6*15, 2-cpu cube sphere on the altices with efc
70    
71     cd MITgcm/verification/global_ocean.cs32x15/code
72     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
73     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
74     \cp SIZE.h_mpi SIZE.h
75    
76     cd ..
77     mkdir build
78     cd build
79 dimitri 1.14 \rm *
80 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
81 dimitri 1.8 make depend
82     make
83    
84     cd ..
85     mkdir run
86     cd run
87 dimitri 1.14 \rm *
88 dimitri 1.8 \cp ../input/* .
89     \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
90     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
91     mpirun -np 2 ../build/mitgcmuv
92    
93    
94     ##########################################################################
95     ##########################################################################
96 dimitri 1.9 # 510*510*6*50, 54-cpu cube sphere on the altices with efc
97 dimitri 1.14 # requires input files in sudirectories run_template and ncep_rgau
98     # presently residing under orion:/tmp1/dmenem/cube
99 dimitri 1.8
100     cd MITgcm/verification/global_ocean.cs32x15/code
101     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
102     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
103     \cp SIZE.h_54 SIZE.h
104 dimitri 1.11 \cp packages.conf_hr packages.conf
105 dimitri 1.13 \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
106 dimitri 1.8
107     cd ..
108     mkdir build
109     cd build
110 dimitri 1.14 \rm *
111 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
112 dimitri 1.8 make depend
113     make
114    
115     cd ..
116     mkdir run
117     cd run
118 dimitri 1.14 \rm *
119 dimitri 1.8 \cp ../input/* .
120     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
121 dimitri 1.9 qsub job_orion
122    
123    
124     ##########################################################################
125     ##########################################################################
126 dimitri 1.13 # 510*510*6*50, 216-cpu cube sphere on altix with efc
127 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
128     # these can be obained from lou:/u/menemenl/cube
129 dimitri 1.9
130     cd MITgcm/verification/global_ocean.cs32x15/code
131     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
132     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
133     \cp SIZE.h_216 SIZE.h
134 dimitri 1.12 \cp packages.conf_hr packages.conf
135 dimitri 1.13 \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
136 dimitri 1.9
137     cd ..
138     mkdir build
139     cd build
140 dimitri 1.15 \rm *
141 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
142 dimitri 1.9 make depend
143     make
144    
145     cd ..
146     mkdir run
147     cd run
148 dimitri 1.15 \rm *
149     \cp ../input/* .
150     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
151 dimitri 1.12 qsub job_altix
152 dimitri 1.17
153    
154     ##########################################################################
155     ##########################################################################
156     # matlab script for generating pChkptFreq
157    
158     nTimeSteps=26352;
159     for niter0=216:26352:(26352*11)
160     pChkptFreq=(niter0+nTimeSteps)*1200;
161     day=pChkptFreq/24/60/60;
162     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
163     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
164     end
165    
166     niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
167     niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
168     niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
169     niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
170     niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
171     niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
172     niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
173     niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
174     niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
175     niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
176     niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
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