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Revision 1.17 - (hide annotations) (download)
Sun Jan 25 00:27:25 2004 UTC (20 years, 5 months ago) by dimitri
Branch: MAIN
Changes since 1.16: +38 -0 lines 
modifications of "cubew2" hi-res cube-sphere integrations
1 dimitri 1.1 Instructions for setting up a cube-sphere integration with sea-ice.
2 dimitri 1.14 Date last tested: January 9, 2004.
3     This is the code used for first multi-year 510x510x6
4     cube-sphere integration.
5 dimitri 1.8
6    
7     ##########################################################################
8     ##########################################################################
9 dimitri 1.14 # getting the code from anonymous CVS server
10 dimitri 1.1
11     setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
12     cvs login ( CVS password: cvsanon )
13 dimitri 1.16 cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/README_ice
14     cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/code-mods
15     cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/matlab-grid-converter
16     cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/input
17     cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/results
18     cvs co -r hrcube_1 MITgcm_code
19     cvs co -r hrcube_1 MITgcm/verification/global_ocean.cs32x15
20 dimitri 1.14
21    
22     ##########################################################################
23     ##########################################################################
24     # 32*32*6*15, 1-cpu cube sphere
25 dimitri 1.3
26 dimitri 1.1 cd MITgcm/verification/global_ocean.cs32x15/code
27 dimitri 1.8 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
28     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
29 dimitri 1.12 \rm mdsio_readfield.F
30 dimitri 1.3
31 dimitri 1.2 cd ..
32     mkdir build
33     cd build
34 dimitri 1.10 ../../../tools/genmake2 -mods=../code
35 dimitri 1.1 make depend
36     make
37 dimitri 1.3
38 dimitri 1.1 cd ..
39     mkdir run
40     cd run
41 dimitri 1.8 \cp ../input/* .
42     \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
43     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
44 dimitri 1.3 ../build/mitgcmuv >& output.txt
45    
46     comparison output is in:
47     ../../../../MITgcm_contrib/high_res_cube/results/output.txt
48    
49     to use matlab to look at the output
50     matlab
51 dimitri 1.17
52 dimitri 1.5 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
53 dimitri 1.13 tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
54 dimitri 1.4 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
55     end
56 dimitri 1.8
57 dimitri 1.17 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
58     mask=0*heff; mask(find(heff>.001))=1;
59     uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
60     vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
61     clf
62     subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
63     subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
64     subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
65     subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
66    
67 dimitri 1.8
68     ##########################################################################
69     ##########################################################################
70     # 32*32*6*15, 2-cpu cube sphere on the altices with efc
71    
72     cd MITgcm/verification/global_ocean.cs32x15/code
73     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
74     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
75     \cp SIZE.h_mpi SIZE.h
76     \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
77     \rm mdsio_readfield.F
78    
79     cd ..
80     mkdir build
81     cd build
82 dimitri 1.14 \rm *
83 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
84 dimitri 1.8 make depend
85     make
86    
87     cd ..
88     mkdir run
89     cd run
90 dimitri 1.14 \rm *
91 dimitri 1.8 \cp ../input/* .
92     \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
93     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
94     mpirun -np 2 ../build/mitgcmuv
95    
96    
97     ##########################################################################
98     ##########################################################################
99 dimitri 1.9 # 510*510*6*50, 54-cpu cube sphere on the altices with efc
100 dimitri 1.14 # requires input files in sudirectories run_template and ncep_rgau
101     # presently residing under orion:/tmp1/dmenem/cube
102 dimitri 1.8
103     cd MITgcm/verification/global_ocean.cs32x15/code
104     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
105     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
106     \cp SIZE.h_54 SIZE.h
107     \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
108 dimitri 1.11 \cp packages.conf_hr packages.conf
109 dimitri 1.13 \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
110 dimitri 1.8 \rm mdsio_readfield.F
111    
112     cd ..
113     mkdir build
114     cd build
115 dimitri 1.14 \rm *
116 dimitri 1.10 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
117 dimitri 1.8 make depend
118     make
119    
120     cd ..
121     mkdir run
122     cd run
123 dimitri 1.14 \rm *
124 dimitri 1.8 \cp ../input/* .
125     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
126 dimitri 1.9 qsub job_orion
127    
128    
129     ##########################################################################
130     ##########################################################################
131 dimitri 1.13 # 510*510*6*50, 216-cpu cube sphere on altix with efc
132 dimitri 1.17 # requires input files in sudirectories run_template and ncep_rgau
133     # these can be obained from lou:/u/menemenl/cube
134 dimitri 1.9
135     cd MITgcm/verification/global_ocean.cs32x15/code
136     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
137     \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
138     \cp SIZE.h_216 SIZE.h
139     \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
140 dimitri 1.12 \cp packages.conf_hr packages.conf
141 dimitri 1.13 \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
142 dimitri 1.9 \rm mdsio_readfield.F
143    
144     cd ..
145     mkdir build
146     cd build
147 dimitri 1.15 \rm *
148 dimitri 1.13 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
149 dimitri 1.9 make depend
150     make
151    
152     cd ..
153     mkdir run
154     cd run
155 dimitri 1.15 \rm *
156     \cp ../input/* .
157     \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
158 dimitri 1.12 qsub job_altix
159 dimitri 1.17
160    
161     ##########################################################################
162     ##########################################################################
163     # matlab script for generating pChkptFreq
164    
165     nTimeSteps=26352;
166     for niter0=216:26352:(26352*11)
167     pChkptFreq=(niter0+nTimeSteps)*1200;
168     day=pChkptFreq/24/60/60;
169     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
170     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
171     end
172    
173     niter0 = 216 , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
174     niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
175     niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
176     niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
177     niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
178     niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
179     niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
180     niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
181     niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
182     niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
183     niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
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