Annotation of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.
Date last tested: January 9, 2004.
This is the code used for first multi-year 510x510x6
cube-sphere integration.


##########################################################################
##########################################################################
# getting the code from anonymous CVS server

setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
cvs login ( CVS password: cvsanon )
cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/README_ice
cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/code-mods
cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/matlab-grid-converter
cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/input
cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/results
cvs co -r hr_cube1 MITgcm_code
cvs co -r hr_cube1 MITgcm/verification/global_ocean.cs32x15


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
\rm mdsio_readfield.F

cd ..
mkdir build
cd build
../../../tools/genmake2 -mods=../code
make depend
make

cd ..
mkdir run
cd run
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab
for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
    tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with efc

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
\rm mdsio_readfield.F

cd ..
mkdir build
cd build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
make depend
make

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
\cp packages.conf_hr packages.conf
\cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
\rm mdsio_readfield.F

cd ..
mkdir build
cd build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
make depend
make

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with efc

setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
cvs login ( CVS password: cvsanon )
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input
cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results
cvs co -r checkpoint52d_pre MITgcm_code
cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
\cp packages.conf_hr packages.conf
\cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
\rm mdsio_readfield.F

cd ..
mkdir build
cd build
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make

cd ..
mkdir run
cd run
qsub job_altix
1	dimitri	1.1	Instructions for setting up a cube-sphere integration with sea-ice.
2	dimitri	1.14	Date last tested: January 9, 2004.
3			This is the code used for first multi-year 510x510x6
4			cube-sphere integration.
5	dimitri	1.8
6
7			##########################################################################
8			##########################################################################
9	dimitri	1.14	# getting the code from anonymous CVS server
10	dimitri	1.1
11			setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
12			cvs login ( CVS password: cvsanon )
13	dimitri	1.14	cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/README_ice
14			cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/code-mods
15			cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/matlab-grid-converter
16			cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/input
17			cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/results
18			cvs co -r hr_cube1 MITgcm_code
19			cvs co -r hr_cube1 MITgcm/verification/global_ocean.cs32x15
20
21
22			##########################################################################
23			##########################################################################
24			# 32326*15, 1-cpu cube sphere
25	dimitri	1.3
26	dimitri	1.1	cd MITgcm/verification/global_ocean.cs32x15/code
27	dimitri	1.8	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
28			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
29	dimitri	1.12	\rm mdsio_readfield.F
30	dimitri	1.3
31	dimitri	1.2	cd ..
32			mkdir build
33			cd build
34	dimitri	1.10	../../../tools/genmake2 -mods=../code
35	dimitri	1.1	make depend
36			make
37	dimitri	1.3
38	dimitri	1.1	cd ..
39			mkdir run
40			cd run
41	dimitri	1.8	\cp ../input/* .
42			\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
43			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
44	dimitri	1.3	../build/mitgcmuv >& output.txt
45
46			comparison output is in:
47			../../../../MITgcm_contrib/high_res_cube/results/output.txt
48
49			to use matlab to look at the output
50			matlab
51	dimitri	1.5	for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
52	dimitri	1.13	tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
53	dimitri	1.4	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
54			end
55	dimitri	1.8
56
57			##########################################################################
58			##########################################################################
59			# 32326*15, 2-cpu cube sphere on the altices with efc
60
61			cd MITgcm/verification/global_ocean.cs32x15/code
62			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
63			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
64			\cp SIZE.h_mpi SIZE.h
65			\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
66			\rm mdsio_readfield.F
67
68			cd ..
69			mkdir build
70			cd build
71	dimitri	1.14	\rm *
72	dimitri	1.10	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
73	dimitri	1.8	make depend
74			make
75
76			cd ..
77			mkdir run
78			cd run
79	dimitri	1.14	\rm *
80	dimitri	1.8	\cp ../input/* .
81			\cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
82			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
83			mpirun -np 2 ../build/mitgcmuv
84
85
86			##########################################################################
87			##########################################################################
88	dimitri	1.9	# 5105106*50, 54-cpu cube sphere on the altices with efc
89	dimitri	1.14	# requires input files in sudirectories run_template and ncep_rgau
90			# presently residing under orion:/tmp1/dmenem/cube
91	dimitri	1.8
92			cd MITgcm/verification/global_ocean.cs32x15/code
93			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
94			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
95			\cp SIZE.h_54 SIZE.h
96			\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
97	dimitri	1.11	\cp packages.conf_hr packages.conf
98	dimitri	1.13	\cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
99	dimitri	1.8	\rm mdsio_readfield.F
100
101			cd ..
102			mkdir build
103			cd build
104	dimitri	1.14	\rm *
105	dimitri	1.10	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
106	dimitri	1.8	make depend
107			make
108
109			cd ..
110			mkdir run
111			cd run
112	dimitri	1.14	\rm *
113	dimitri	1.8	\cp ../input/* .
114			\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
115	dimitri	1.9	qsub job_orion
116
117
118			##########################################################################
119			##########################################################################
120	dimitri	1.13	# 5105106*50, 216-cpu cube sphere on altix with efc
121	dimitri	1.9
122			setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
123			cvs login ( CVS password: cvsanon )
124			cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice
125			cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods
126			cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter
127			cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input
128			cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results
129			cvs co -r checkpoint52d_pre MITgcm_code
130			cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15
131
132			cd MITgcm/verification/global_ocean.cs32x15/code
133			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
134			\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
135			\cp SIZE.h_216 SIZE.h
136			\cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
137	dimitri	1.12	\cp packages.conf_hr packages.conf
138	dimitri	1.13	\cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
139	dimitri	1.9	\rm mdsio_readfield.F
140
141			cd ..
142			mkdir build
143			cd build
144	dimitri	1.13	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
145	dimitri	1.9	make depend
146			make
147
148			cd ..
149			mkdir run
150			cd run
151	dimitri	1.12	qsub job_altix