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dimitri |
1.1 |
Instructions for setting up a cube-sphere integration with sea-ice. |
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dimitri |
1.51 |
########################################################################## |
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# Get forcing files, etc. |
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dimitri |
1.52 |
# Example below is for cube94 on pleiades |
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dimitri |
1.51 |
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mkdir cube94 |
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cd cube94 |
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ln -sf /nobackupp10/hzhang1/cs510/run_template . |
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ln -sf /nobackupp10/hzhang1/forcing/jra25 . |
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ln -sf /nobackupp10/hzhang1/forcing/cube78_forcing . |
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########################################################################## |
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# getting the code from anonymous CVS server |
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cvs co MITgcm_contrib/high_res_cube/README.cs510 |
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cvs co MITgcm_contrib/high_res_cube/code-mods |
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cvs co MITgcm_contrib/high_res_cube/input |
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cvs co MITgcm_code |
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########################################################################## |
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# 510*510*6*50, 450-cpu cube sphere on pleiades with ifort |
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cd MITgcm |
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mkdir build run |
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cd build |
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\rm * |
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\cp ../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../MITgcm_contrib/high_res_cube/code-mods/s450t_34x102/SIZE.h . |
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\rm README SIZE.h_mpi |
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../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas |
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make depend |
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make -j 16 |
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cd ../run |
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\rm * |
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\cp ../../MITgcm_contrib/high_res_cube/input/*data* . |
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\cp ../../MITgcm_contrib/high_res_cube/input/modpickup . |
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\cp ../../MITgcm_contrib/high_res_cube/input/job* . |
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\mv data.seaice_hr data.seaice |
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\mv data.exf_hr data.exf |
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\mv data_hr data |
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\ln -sf ../../run_template/tile* . |
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\ln -sf ../../run_template/G*dig* . |
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\ln -sf ../../run_template/*Init.cube78 . |
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\cp ../build/mitgcmuv . |
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qsub job_cs510_pleiades450 |
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dimitri |
1.1 |
================= |
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UPDATES |
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dimitri |
1.51 |
March 19, 2012. Cube94 on pleiades |
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This integration is driven by JRA25 (as was cube92) |
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but it includes shelfice (as did cube86), |
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it is based on MITgcm > checkpoint63k (that is post ICE workshop code), |
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it uses optimized Arctic sea ice parameters from |
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http://ecco2.jpl.nasa.gov/data1/arctic/output/newcode_050109/JRA25_OPT3/input/data.seaice |
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http://ecco2.org/manuscripts/2011/NguyenJGR2011.pdf |
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it uses Southern Ocean ice and ice shelf parameters from JSO24 |
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/data14/scratch/hzhang/CP/JSO24/input |
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(bathymetry and initial conditions tbd), |
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and it uses pkg/bbl and frazil instead of down_slope |
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dimitri |
1.49 |
July 27, 2010. Cube88 on pleiades - same as cube84 but with: |
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1. JRA25 instead of cube84 blend forcing |
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2. useSALT_PLUME = .TRUE., (off in Southern Ocean) |
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3. useDOWN_SLOPE = .TRUE., |
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4. split north/south data.sec17saice parameters from regional optimizations |
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5. initialize from T/S/U/V/ETAN and sea ice from cube78 Jan 1992 pickup |
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6. 3-day 3D diagnostics |
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7. SEAICE_no_slip = .TRUE. to keep code stable |
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dimitri |
1.45 |
June 30, 2009. Cube86 -same as cube85 but with: |
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1. updated Southern OCean Bathymetry |
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2. ice shelf cavities |
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dimitri |
1.42 |
June 16, 2009. Cube85 -same as cube84 but with: |
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1. split north/south data.seaice parameters from regional optimizations |
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2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally |
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3. initialize from T/S/U/V/ETAN and sea ice files |
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4. 3-day 3D diagnostics |
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dimitri |
1.43 |
5. SEAICE_no_slip=.TRUE. to keep code stable |
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dimitri |
1.42 |
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dimitri |
1.38 |
June 13, 2008. Cube 81 - same as cube79 but with |
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dimitri |
1.42 |
1. new values for data.seaice and data.exf |
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2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic |
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3. GMRedi turned off |
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dimitri |
1.38 |
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dimitri |
1.37 |
December 22, 2007. Cube80 - same as cube79 but with |
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SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea) |
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ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis |
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ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis |
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December 2, 2007. Cube79 - same as cube78 (blend3) but with |
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useRelativeWind=.TRUE. and SEAICE_gamma_t=259200 |
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dimitri |
1.34 |
November 22, 2007. Cube 78 - blend 3 |
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dimitri |
1.29 |
November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY |
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and era40_ecmwf_blend/cube59_GPCP forcing |
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November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration |
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dimitri |
1.24 |
August 31, 2007. Cube75 - the second blend. |
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dimitri |
1.21 |
August 9, 2007. Cube74 |
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dimitri |
1.20 |
August 6, 2007. Cube73 |
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dimitri |
1.18 |
July 24, 2007. Cube72 |
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dimitri |
1.17 |
July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT, |
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dimitri |
1.13 |
rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6 |
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useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10 |
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dimitri |
1.16 |
bathyFile=GEBCO_510x6x510_ver06_dig.bin, HeffFile=heff_file8 |
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dimitri |
1.17 |
SEAICE_availHeatFrac=.5, useGMRedi=.TRUE. |
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dimitri |
1.10 |
April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity |
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dimitri |
1.13 |
(cube67, cube68, and cube69 were carried out with cube65 code) |
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dimitri |
1.7 |
April 7 , 2007. Cube64: era40_fullres forcing |
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dimitri |
1.1 |
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dimitri |
1.51 |
February 6, 2006: cube56, same as cube 50 with SEAICEuseFlooding |
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February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.002) |
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removed UVEL and VVEL from diagnostics |
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January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012 |
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January 5, 2006: cube50, like cube48 but with snow advection |
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December 30, 2006: updates for cube49, the first |
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"blend" integration. |
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dimitri |
1.1 |
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dimitri |
1.51 |
December 11, 2006: preparing for cube47, same as cube43 |
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but with Arctic monthly river runoff climatology. |
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dimitri |
1.1 |
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dimitri |
1.51 |
December 5, 2006: 216-CPU code for cube46 |
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Changed diagnostics to accomodate JMCs latest and some |
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changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h |
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to speed up code. |
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dimitri |
1.34 |
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dimitri |
1.51 |
November 7, 2006: 216-CPU code for cube43 |
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Bug fixes in growth.F routine and new set of diagnostics |
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dimitri |
1.1 |
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dimitri |
1.51 |
October 15, 2006: 216-CPU code for cube40 |
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dimitri |
1.1 |
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dimitri |
1.51 |
September 28, 2006: 216-CPU code for cube38 |
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dimitri |
1.1 |
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dimitri |
1.51 |
September 4, 2006 |
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Modified 32*32*6*15 experiments to use grid_cs32.* files from |
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verification/tutorial_held_suarez_cs/input instead of |
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tile* files from verification/global_ocean.cs32x15/input |
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dimitri |
1.1 |
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dimitri |
1.51 |
August 8, 2006: 216-CPU code and input used for cube37 |
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using "June 10, 2006" MITgcm code. |
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dimitri |
1.2 |
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dimitri |
1.51 |
for online T/S profile diagnostics all that is needed is |
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profiles_init_fixed |
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profiles_inloop |
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see pkg/ecco/ecco_cost_init_fixed.F |
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pkg/ecco/cost_averagesfields.F |
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