/[MITgcm]/MITgcm_contrib/high_res_cube/README.cs510
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revision 1.26 by dimitri, Sun Nov 4 04:12:51 2007 UTC revision 1.48 by dimitri, Fri May 7 23:11:28 2010 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
 Forcing fields and other input files needed for the CS510  
 configuration can be obtained from  
 http://ecco2.org/products/model_setups/cs510.html  
   
3  =================  =================
4    
5  UPDATES  UPDATES
6    
7  November 3, 2007. Cube 76 - 1979-2006 integration  June 30, 2009.  Cube86 -same as cube85 but with:
8       1. updated Southern OCean Bathymetry
9       2. ice shelf cavities
10    
11    June 16, 2009. Cube85 -same as cube84 but with:
12       1. split north/south data.seaice parameters from regional optimizations
13       2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
14       3. initialize from T/S/U/V/ETAN and sea ice files
15       4. 3-day 3D diagnostics
16       5. SEAICE_no_slip=.TRUE. to keep code stable
17    
18    June 13, 2008. Cube 81 - same as cube79 but with
19       1. new values for data.seaice and data.exf
20       2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
21       3. GMRedi turned off
22    
23    December 22, 2007. Cube80 - same as cube79 but with
24       SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
25       ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
26       ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
27    December 2, 2007. Cube79 - same as cube78 (blend3) but with
28       useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
29    November 22, 2007. Cube 78 - blend 3
30    November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
31                                and era40_ecmwf_blend/cube59_GPCP forcing
32    November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration
33  August 31, 2007.  Cube75 - the second blend.  August 31, 2007.  Cube75 - the second blend.
34  August 9, 2007. Cube74  August 9, 2007. Cube74
35  August 6, 2007. Cube73  August 6, 2007. Cube73
# Line 25  April 7 , 2007. Cube64: era40_fullres fo Line 46  April 7 , 2007. Cube64: era40_fullres fo
46    
47  ##########################################################################  ##########################################################################
48  # Get forcing files, etc.  # Get forcing files, etc.
49  # Example below is for cube76 on /nobackup2a/menemenl  # Example below is for cube86 on /nobackup/dmenemen
50    
51  cd /nobackup2a/menemenl  cd /nobackup/dmenemen/cs510
52  mkdir cube76  mkdir cube86
53  cd cube76  cd cube86
54  ln -sf ../run_template .  ln -sf ../run_template .
55  ln -sf ../cube59_GPCP .  ln -sf ../../forcing/cube78_forcing .
56  ln -sf ../cube59_GPCP .  
 ln -sf ../era40_ecmwf_blend .  
 ln -sf ../ncep_rgau .  
57    
58  ##########################################################################  ##########################################################################
59  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
60    
   bash or sh shell:  
     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
   tcsh or csh shell:  
     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
61  cvs co MITgcm_contrib/high_res_cube/README.cs510  cvs co MITgcm_contrib/high_res_cube/README.cs510
62  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
63  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
# Line 56  cvs co MITgcm_code Line 65  cvs co MITgcm_code
65    
66    
67  ##########################################################################  ##########################################################################
68  # 510*510*6*50, 216-cpu cube sphere on altix with ifort  # 510*510*6*50, 216-cpu cube sphere on pleiades with ifort
69    
70  cd MITgcm  cd MITgcm
71  mkdir build run  mkdir build run
72  cd build  cd build
73  \rm *  \rm *
74  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
75  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/SIZE.h_216 SIZE.h
76  \cp SIZE.h_216 SIZE.h  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas
 ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas  
77  make depend  make depend
78  make -j  make -j 8
79  cd ../run  cd ../run
80  \rm *  \rm *
81  \cp ../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../MITgcm_contrib/high_res_cube/input/* .
82  ln -sf ../../run_template/* .  \ln -sf ../../run_template/* .
83  \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC*JAN*  \rm *192_94* *.m heff_* pickup* A* D* E*
84    \rm G*all.bin G*dig.bin L* PHC* W*
85    \rm saltInit.cube78 thetaInit.cube78
86    \mv data.seaice_hr data.seaice
87  \mv data.exf_hr data.exf  \mv data.exf_hr data.exf
88  \mv data_hr data  \mv data_hr data
 ln -sf ../../run_template/pickup.0000000216.cube75 pickup.0000000216  
 ln -sf ../../run_template/pickup_seaice.0000000216.cube75 pickup_seaice.0000000216  
89  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
90  \mv job_altix cube76  \mv job_altix cube86
91  qsub cube76  qsub cube86
   
   
 ##########################################################################  
 # generating initial pickup files for cube74  
   
 data.cal  
 # start on December 30 because of bug that does  
 # not allow a January 1, hour 0 start  
  startDate_1=19881230,  
   
 data  
 # run for 4 days with 2-min time step  
  niter0=0,  
  endtime=345600.,  
  deltaT=120.,  
  pChkptFreq=345600.,  
  monitorFreq=1.,  
   
 data.seaice  
 # set SEAICE_salinity to 33 to avoid initialization schock if  
 # ice is created or melts during first time step  
       HeffFile           = 'heff_file8',  
       SEAICE_salinity    = 33.,  
   
 \mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube74  
 \mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube74  
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