/[MITgcm]/MITgcm_contrib/high_res_cube/README.cs510
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revision 1.34 by dimitri, Sat Dec 1 07:30:39 2007 UTC revision 1.42 by dimitri, Tue Jun 16 20:57:45 2009 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
 Forcing fields and other input files needed for the CS510  
 configuration can be obtained from  
 http://ecco2.org/products/model_setups/cs510.html  
   
3  =================  =================
4    
5  UPDATES  UPDATES
6    
7    June 16, 2009. Cube85 -same as cube84 but with:
8       1. split north/south data.seaice parameters from regional optimizations
9       2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
10       3. initialize from T/S/U/V/ETAN and sea ice files
11       4. 3-day 3D diagnostics
12    
13    June 13, 2008. Cube 81 - same as cube79 but with
14       1. new values for data.seaice and data.exf
15       2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
16       3. GMRedi turned off
17    
18    December 22, 2007. Cube80 - same as cube79 but with
19       SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
20       ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
21       ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
22    December 2, 2007. Cube79 - same as cube78 (blend3) but with
23       useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
24  November 22, 2007. Cube 78 - blend 3  November 22, 2007. Cube 78 - blend 3
25  November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY  November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
26                              and era40_ecmwf_blend/cube59_GPCP forcing                              and era40_ecmwf_blend/cube59_GPCP forcing
# Line 28  April 7 , 2007. Cube64: era40_fullres fo Line 41  April 7 , 2007. Cube64: era40_fullres fo
41    
42  ##########################################################################  ##########################################################################
43  # Get forcing files, etc.  # Get forcing files, etc.
44  # Example below is for cube78 on /nobackup2a/menemenl  # Example below is for cube85 on /nobackup2a/menemenl
45    
46  cd /nobackup2a/menemenl  cd /nobackup2a/menemenl
47  mkdir cube78  mkdir cube84
48  cd cube78  cd cube84
49  ln -sf ../run_template .  ln -sf ../run_template .
50  ln -sf ../cube78_forcing .  ln -sf ../cube78_forcing .
 ln -sf ../ncep_rgau/ .  
51    
52    
53  ##########################################################################  ##########################################################################
54  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
55    
   bash or sh shell:  
     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
   tcsh or csh shell:  
     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
56  cvs co MITgcm_contrib/high_res_cube/README.cs510  cvs co MITgcm_contrib/high_res_cube/README.cs510
57  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
58  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
# Line 58  cvs co MITgcm_code Line 60  cvs co MITgcm_code
60    
61    
62  ##########################################################################  ##########################################################################
63  # 510*510*6*50, 216-cpu cube sphere on altix with ifort  # 510*510*6*50, 450-cpu cube sphere on altix with ifort
64    
65  cd MITgcm  cd MITgcm
66  mkdir build run  mkdir build run
67  cd build  cd build
68  \rm *  \rm *
69  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
70  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/SIZE.h_216 SIZE.h
71  \cp SIZE.h_216 SIZE.h  ../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas
 ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas  
72  make depend  make depend
73  make -j  make -j 8
74  cd ../run  cd ../run
75  \rm *  \rm *
76  \cp ../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../MITgcm_contrib/high_res_cube/input/* .
77  ln -sf ../../run_template/* .  ln -sf ../../run_template/* .
78  \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC*  \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC*
79    \mv data.seaice_hr data.seaice
80  \mv data.exf_hr data.exf  \mv data.exf_hr data.exf
81  \mv data_hr data  \mv data_hr data
 ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216  
 ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216  
 ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta  
 ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta  
82  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
83  \mv job_altix cube78  \mv job_altix cube85
84  qsub cube78  qsub cube85
   
   
 ##########################################################################  
 # generating initial pickup files for cube78  
   
 data  
 # run for 4 days from time step 216 with 2-min time step  
  endtime=345600.,  
  deltaT=120.,  
  pChkptFreq=345600.,  
  monitorFreq=1.,  
   
 cd ../../run_template  
 mv pickup.0000000216.cube78 pickup.0000000216.cube78_raw  
 mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216.cube78_raw  
 cd ../cube78/MITgcm/run  
 \mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube78  
 \mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube78  
 \mv pickup.0000002880.meta ../../run_template/pickup.0000000216.meta.cube78  
 \mv pickup_seaice.0000002880.meta ../../run_template/pickup_seaice.0000000216.meta.cube78  
 \rm *.meta *.data STD* cube78.o*  
 \cp ../../MITgcm_contrib/high_res_cube/input/data_hr data  
 ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216  
 ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216  
 ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta  
 ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta  
 qsub cube78  
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