|  | !!!! Instructions in this file are obsolete and will eventually |  | 
|  | !!!! be removed.  This file has been replaced by |  | 
|  | !!!! MITgcm_contrib/high_res_cube/README.cs510 |  | 
|  | !!!! MITgcm_contrib/high_res_cube/README.cs32 |  | 
|  |  |  | 
|  | ================= |  | 
|  |  |  | 
| 1 | Instructions for setting up a cube-sphere integration with sea-ice. | Instructions for setting up a cube-sphere integration with sea-ice. | 
| 2 |  |  | 
| 3 | Forcing fields and other input files needed for the CS510 | Forcing fields and other input files needed for the CS510 | 
| 8 |  |  | 
| 9 | UPDATES | UPDATES | 
| 10 |  |  | 
| 11 | February 6, 2006: cube56, same as cube 50 with SEAICEuseFlooding | June 13, 2008. Cube 81 - same as cube79 but with | 
| 12 |  | 1. salt plume package turned on | 
| 13 | February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.002) | 2. new values for data.seaice and data.exf | 
| 14 | removed UVEL and VVEL from diagnostics | 3. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic | 
| 15 |  | 4. GMRedi turned off | 
| 16 | January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012 |  | 
| 17 |  | December 22, 2007. Cube80 - same as cube79 but with | 
| 18 | January 5, 2006: cube50, like cube48 but with snow advection | SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea) | 
| 19 |  | ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis | 
| 20 | December 30, 2006: updates for cube49, the first | ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis | 
| 21 | "blend" integration. | December 2, 2007. Cube79 - same as cube78 (blend3) but with | 
| 22 |  | useRelativeWind=.TRUE. and SEAICE_gamma_t=259200 | 
| 23 | December 11, 2006: preparing for cube47, same as cube43 | November 22, 2007. Cube 78 - blend 3 | 
| 24 | but with Arctic monthly river runoff climatology. | November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY | 
| 25 |  | and era40_ecmwf_blend/cube59_GPCP forcing | 
| 26 | December 5, 2006: 216-CPU code for cube46 | November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration | 
| 27 | Changed diagnostics to accomodate JMCs latest and some | August 31, 2007.  Cube75 - the second blend. | 
| 28 | changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h | August 9, 2007. Cube74 | 
| 29 | to speed up code. | August 6, 2007. Cube73 | 
| 30 |  | July 24, 2007. Cube72 | 
| 31 |  | July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT, | 
| 32 |  | rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6 | 
| 33 |  | useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10 | 
| 34 |  | bathyFile=GEBCO_510x6x510_ver06_dig.bin, HeffFile=heff_file8 | 
| 35 |  | SEAICE_availHeatFrac=.5, useGMRedi=.TRUE. | 
| 36 |  | April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity | 
| 37 |  | (cube67, cube68, and cube69 were carried out with cube65 code) | 
| 38 |  | April 7 , 2007. Cube64: era40_fullres forcing | 
| 39 |  |  | 
|  | November 7, 2006: 216-CPU code for cube43 |  | 
|  | Bug fixes in growth.F routine and new set of diagnostics |  | 
|  |  |  | 
|  | October 15, 2006: 216-CPU code for cube40 |  | 
|  |  |  | 
|  | September 28, 2006: 216-CPU code for cube38 |  | 
|  |  |  | 
|  | September 4, 2006 |  | 
|  | Modified 32*32*6*15 experiments to use grid_cs32.* files from |  | 
|  | verification/tutorial_held_suarez_cs/input instead of |  | 
|  | tile* files from verification/global_ocean.cs32x15/input |  | 
|  |  |  | 
|  | August 8, 2006: 216-CPU code and input used for cube37 |  | 
|  | using "June 10, 2006" MITgcm code. |  | 
|  |  |  | 
|  | for online T/S profile diagnostics all that is needed is |  | 
|  | profiles_init_fixed |  | 
|  | profiles_inloop |  | 
|  | see pkg/ecco/ecco_cost_init_fixed.F |  | 
|  | pkg/ecco/cost_averagesfields.F |  | 
| 40 |  |  | 
| 41 | ########################################################################## | ########################################################################## | 
|  | ########################################################################## |  | 
| 42 | # Get forcing files, etc. | # Get forcing files, etc. | 
| 43 | # Example below is for cube46 on /nobackup2a/menemenl | # Example below is for cube81 on /nobackup2a/menemenl | 
| 44 |  |  | 
| 45 | cd /nobackup2a/menemenl | cd /nobackup2a/menemenl | 
| 46 | mkdir cube47 | mkdir cube81 | 
| 47 | cd cube47 | cd cube81 | 
| 48 | ln -sf ../run_template . | ln -sf ../run_template . | 
| 49 | ln -sf ../ncep_rgau . | ln -sf ../cube78_forcing . | 
| 50 |  | ln -sf ../ncep_rgau/ . | 
| 51 |  |  | 
| 52 |  |  | 
| 53 | ########################################################################## | ########################################################################## | 
|  | ########################################################################## |  | 
| 54 | # getting the code from anonymous CVS server | # getting the code from anonymous CVS server | 
| 55 |  |  | 
| 56 | bash or sh shell: | bash or sh shell: | 
| 63 | $ cvs login | $ cvs login | 
| 64 | ( enter the CVS password: "cvsanon" ) | ( enter the CVS password: "cvsanon" ) | 
| 65 |  |  | 
| 66 | cvs co MITgcm_contrib/high_res_cube/README_ice | cvs co MITgcm_contrib/high_res_cube/README.cs510 | 
| 67 | cvs co MITgcm_contrib/high_res_cube/code-mods | cvs co MITgcm_contrib/high_res_cube/code-mods | 
| 68 | cvs co MITgcm_contrib/high_res_cube/input | cvs co MITgcm_contrib/high_res_cube/input | 
|  | cvs co MITgcm_contrib/high_res_cube/results |  | 
| 69 | cvs co MITgcm_code | cvs co MITgcm_code | 
|  | cvs co MITgcm/verification/global_ocean.cs32x15 |  | 
|  | cvs co MITgcm/verification/tutorial_held_suarez_cs/input |  | 
|  |  |  | 
|  |  |  | 
|  | ########################################################################## |  | 
|  | ########################################################################## |  | 
|  | # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics |  | 
|  |  |  | 
|  | cd MITgcm/verification/global_ocean.cs32x15/code |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |  | 
|  | \cp SIZE.h_216 SIZE.h |  | 
|  | \cp packages.conf_hr packages.conf |  | 
|  |  |  | 
|  | cd ../build |  | 
|  | \rm * |  | 
|  | ../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas |  | 
|  | make depend |  | 
|  | make -j |  | 
|  |  |  | 
|  | cd .. |  | 
|  | mkdir run |  | 
|  | cd run |  | 
|  | \rm * |  | 
|  | \cp ../input/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/input/* . |  | 
|  | ln -sf ../../../../run_template/* . |  | 
|  | \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr* |  | 
|  | \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t |  | 
|  | ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216 |  | 
|  | ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216 |  | 
|  | \cp ../build/mitgcmuv . |  | 
|  | qsub job_altix |  | 
|  |  |  | 
|  |  |  | 
|  | ########################################################################## |  | 
|  | ########################################################################## |  | 
|  | # 32*32*6*15, 1-cpu cube sphere |  | 
|  |  |  | 
|  | cd MITgcm/verification/global_ocean.cs32x15/code |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |  | 
|  | \cp ../../../utils/exch2/code-mods/s12t_16x32/* . |  | 
|  | \rm CPP_EEOPTIONS.h |  | 
|  | cd ../build |  | 
|  | \rm * |  | 
|  | ../../../tools/genmake2 -mods=../code |  | 
|  | make depend |  | 
|  | make |  | 
|  | cd .. |  | 
|  | mkdir run |  | 
|  | cd run |  | 
|  | \rm * |  | 
|  | \cp ../../tutorial_held_suarez_cs/input/grid* . |  | 
|  | \cp ../input/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/input/* . |  | 
|  | ../build/mitgcmuv >& output.txt |  | 
|  |  |  | 
|  | comparison output is in: |  | 
|  | ../../../../MITgcm_contrib/high_res_cube/results/output.txt |  | 
|  |  |  | 
|  | to use matlab to look at the output |  | 
|  | matlab |  | 
|  |  |  | 
|  | for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ... |  | 
|  | 'surForcT','oceTAUX','oceTAUY','surForcS'} |  | 
|  | tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]); |  | 
|  | cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |  | 
|  | end |  | 
|  |  |  | 
|  | heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]); |  | 
|  | mask=0*heff; mask(find(heff>.001))=1; |  | 
|  | uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]); |  | 
|  | vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]); |  | 
|  | clf |  | 
|  | subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3') |  | 
|  | subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6') |  | 
|  | subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3') |  | 
|  | subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6') |  | 
|  |  |  | 
|  |  |  | 
|  | ########################################################################## |  | 
|  | ########################################################################## |  | 
|  | # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment |  | 
|  |  |  | 
|  | cd MITgcm/verification/global_ocean.cs32x15/code |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |  | 
|  | \cp ../code_alt/code.176t_8x4/* . |  | 
|  | cd ../build |  | 
|  | \rm * |  | 
|  | ../../../tools/genmake2 -mods=../code |  | 
|  | make depend |  | 
|  | make |  | 
|  | cd .. |  | 
|  | mkdir run |  | 
|  | cd run |  | 
|  | \rm * |  | 
|  | \cp ../../tutorial_held_suarez_cs/input/grid* . |  | 
|  | \cp ../input/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/input/* . |  | 
|  | ../build/mitgcmuv >& output.txt |  | 
|  |  |  | 
|  |  |  | 
|  | ########################################################################## |  | 
|  | ########################################################################## |  | 
|  | # 32*32*6*15, 2-cpu cube sphere on the altices with ifort |  | 
|  |  |  | 
|  | cd MITgcm/verification/global_ocean.cs32x15/code |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |  | 
|  | \cp ../../../utils/exch2/code-mods/s12t_16x32/* . |  | 
|  | \cp SIZE.h_mpi SIZE.h |  | 
|  |  |  | 
|  | cd ../build |  | 
|  | \rm * |  | 
|  | ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |  | 
|  | make depend |  | 
|  | make -j |  | 
|  |  |  | 
|  | cd .. |  | 
|  | mkdir run |  | 
|  | cd run |  | 
|  | \rm * |  | 
|  | \cp ../../tutorial_held_suarez_cs/input/grid* . |  | 
|  | \cp ../input/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/input/* . |  | 
|  | mpirun -np 2 ../build/mitgcmuv |  | 
|  |  |  | 
|  |  |  | 
|  | ########################################################################## |  | 
|  | ########################################################################## |  | 
|  | # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc |  | 
|  | # starting with pickup file from end of 1992 |  | 
|  | # requires input files in sudirectories run_template and ncep_rgau |  | 
|  |  |  | 
|  | cd MITgcm/verification/global_ocean.cs32x15/code |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* . |  | 
|  | \cp packages.conf_hr packages.conf |  | 
|  |  |  | 
|  | cd ../build |  | 
|  | \rm * |  | 
|  | ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |  | 
|  | make depend |  | 
|  | make -j |  | 
|  |  |  | 
|  | cd .. |  | 
|  | mkdir run |  | 
|  | cd run |  | 
|  | \rm * |  | 
|  | \cp ../input/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/input/* . |  | 
|  | qsub job_altix92_54t |  | 
|  |  |  | 
|  |  |  | 
|  | ########################################################################## |  | 
|  | ########################################################################## |  | 
|  | # 510*510*6*50, 1500-tile, 150-cpu, excludes land |  | 
|  | # uses s1500t_17x51 configuration |  | 
|  |  |  | 
|  | cd MITgcm/verification/global_ocean.cs32x15/code |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |  | 
|  | \cp SIZE.h_150 SIZE.h |  | 
|  | \cp packages.conf_hr packages.conf |  | 
|  |  |  | 
|  | cd ../build |  | 
|  | \rm * |  | 
|  | ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |  | 
|  | make depend |  | 
|  | make -j |  | 
|  |  |  | 
|  | cd .. |  | 
|  | mkdir run |  | 
|  | cd run |  | 
|  | \rm * |  | 
|  | \cp ../input/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/input/* . |  | 
|  | ln -sf ../../../../run_template/* . |  | 
|  | \rm pickup* |  | 
|  | ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |  | 
|  | ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |  | 
|  | \cp ../build/mitgcmuv mitgcmuv150 |  | 
|  | qsub job_altix150 |  | 
|  |  |  | 
|  |  |  | 
|  | ########################################################################## |  | 
|  | ########################################################################## |  | 
|  | # 510*510*6*50, 1500-tile, 375-cpu, excludes land |  | 
|  | # uses s1500t_17x51 configuration |  | 
|  | # example for running on c17-c20 using arrayd |  | 
|  |  |  | 
|  | cd MITgcm/verification/global_ocean.cs32x15/code |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |  | 
|  | \cp SIZE.h_375 SIZE.h |  | 
|  | \cp packages.conf_hr packages.conf |  | 
|  |  |  | 
|  | cd ../build |  | 
|  | \rm * |  | 
|  | ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |  | 
|  | make depend |  | 
|  | make -j |  | 
|  |  |  | 
|  | cd .. |  | 
|  | mkdir run |  | 
|  | cd run |  | 
|  | \rm * |  | 
|  | \cp ../input/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/input/* . |  | 
|  | ln -sf ../../../../run_template/* . |  | 
|  | \rm pickup* |  | 
|  | ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |  | 
|  | ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |  | 
|  | \cp ../build/mitgcmuv . |  | 
|  | job_c20_375cpu < /dev/null >&! output.run & |  | 
|  |  |  | 
|  |  |  | 
|  | ########################################################################## |  | 
|  | ########################################################################## |  | 
|  | # 510*510*6*50, 1500-tile, 375-cpu, excludes land |  | 
|  | # uses s1500t_17x51 configuration |  | 
|  | # example for running on c17-c20 using arrayd |  | 
|  |  |  | 
|  | cd MITgcm/verification/global_ocean.cs32x15/code |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |  | 
|  | \cp SIZE.h_375 SIZE.h |  | 
|  | \cp packages.conf_hr packages.conf |  | 
|  |  |  | 
|  | cd ../build |  | 
|  | \rm * |  | 
|  | ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |  | 
|  | make depend |  | 
|  | make -j |  | 
|  |  |  | 
|  | cd .. |  | 
|  | mkdir run |  | 
|  | cd run |  | 
|  | \rm * |  | 
|  | \cp ../input/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/input/* . |  | 
|  | ln -sf ../../../../run_template/* . |  | 
|  | \rm pickup* |  | 
|  | ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |  | 
|  | ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |  | 
|  | \cp ../build/mitgcmuv . |  | 
|  | job_c20_375cpu < /dev/null >&! output.run & |  | 
| 70 |  |  | 
| 71 |  |  | 
| 72 | ########################################################################## | ########################################################################## | 
| 73 | ########################################################################## | # 510*510*6*50, 450-cpu cube sphere on altix with ifort | 
|  | # 510*510*6*50, 1500-tile, 500-cpu, excludes land |  | 
|  | # uses s1500t_17x51 configuration |  | 
|  | # example for running on c17-c20 using arrayd |  | 
|  |  |  | 
|  | cd MITgcm/verification/global_ocean.cs32x15/code |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |  | 
|  | \cp SIZE.h_500 SIZE.h |  | 
|  | \cp packages.conf_hr packages.conf |  | 
|  |  |  | 
|  | cd ../build |  | 
|  | \rm * |  | 
|  | ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |  | 
|  | make depend |  | 
|  | make -j |  | 
| 74 |  |  | 
| 75 | cd .. | cd MITgcm | 
| 76 | mkdir run | mkdir build run | 
| 77 | cd run | cd build | 
| 78 | \rm * | \rm * | 
| 79 | \cp ../input/* . | \cp ../../MITgcm_contrib/high_res_cube/code-mods/* . | 
| 80 | \cp ../../../../MITgcm_contrib/high_res_cube/input/* . | \cp ../../MITgcm_contrib/high_res_cube/code-mods/s1800t_17x51/* . | 
| 81 | ln -sf ../../../../run_template/* . | \mv SIZE.h_450 SIZE.h | 
| 82 | \rm pickup* | ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas | 
| 83 | ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 | make depend | 
| 84 | ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 | make -j | 
| 85 |  | cd ../run | 
| 86 |  | \rm * | 
| 87 |  | \cp ../../MITgcm_contrib/high_res_cube/input/* . | 
| 88 |  | ln -sf ../../run_template/* . | 
| 89 |  | \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC* | 
| 90 |  | \mv data.exf_hr data.exf | 
| 91 |  | \mv data_hr data | 
| 92 |  | ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216 | 
| 93 |  | ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 | 
| 94 |  | ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta | 
| 95 |  | ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta | 
| 96 | \cp ../build/mitgcmuv . | \cp ../build/mitgcmuv . | 
| 97 | job_c19_500cpu < /dev/null >&! output.run & | \mv job_altix cube81 | 
| 98 |  | qsub cube81 | 
| 99 |  |  | 
| 100 |  |  | 
| 101 | ########################################################################## | ########################################################################## | 
| 102 | ########################################################################## | # generating initial pickup files for cube78 | 
|  | # 510*510*6*50, 216-cpu cube sphere on cosmos |  | 
| 103 |  |  | 
| 104 | cd MITgcm/verification/global_ocean.cs32x15/code | data | 
| 105 | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . | # run for 4 days from time step 216 with 2-min time step | 
| 106 | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . | endtime=345600., | 
| 107 | \cp SIZE.h_216 SIZE.h | deltaT=120., | 
| 108 | \cp packages.conf_hr packages.conf | pChkptFreq=345600., | 
| 109 |  | monitorFreq=1., | 
| 110 | module unload latest_intel80 |  | 
| 111 | module unload mpich-gm-intel80 | cd ../../run_template | 
| 112 | module load latest_intel81 | mv pickup.0000000216.cube78 pickup.0000000216.cube78_raw | 
| 113 | module load mpich-gm-intel81 | mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216.cube78_raw | 
| 114 |  | cd ../cube78/MITgcm/run | 
| 115 | cd ../build | \mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube78 | 
| 116 | \rm * | \mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube78 | 
| 117 | ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos | \mv pickup.0000002880.meta ../../run_template/pickup.0000000216.meta.cube78 | 
| 118 | make depend | \mv pickup_seaice.0000002880.meta ../../run_template/pickup_seaice.0000000216.meta.cube78 | 
| 119 | make -j | \rm *.meta *.data STD* cube78.o* | 
| 120 |  | \cp ../../MITgcm_contrib/high_res_cube/input/data_hr data | 
| 121 | cd .. | ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216 | 
| 122 | mkdir run | ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 | 
| 123 | cd run | ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta | 
| 124 | \rm * | ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta | 
| 125 | \cp ../input/* . | qsub cube78 | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/input/* . |  | 
|  | ln -sf ../../../../run_template/* . |  | 
|  | \rm pickup* |  | 
|  | ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |  | 
|  | ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |  | 
|  | \cp ../build/mitgcmuv . |  | 
|  | bsub < job_cosmos |  | 
|  |  |  | 
|  |  |  | 
|  | ########################################################################## |  | 
|  | ########################################################################## |  | 
|  | # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc |  | 
|  | # requires input files in sudirectories run_template and ncep_rgau |  | 
|  | # presently residing under orion:/tmp1/dmenem/cube |  | 
|  |  |  | 
|  | cd MITgcm/verification/global_ocean.cs32x15/code |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |  | 
|  | \cp SIZE.h_54 SIZE.h |  | 
|  | \cp packages.conf_hr packages.conf |  | 
|  |  |  | 
|  | cd ../build |  | 
|  | \rm * |  | 
|  | ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |  | 
|  | make depend |  | 
|  | make -j |  | 
|  |  |  | 
|  | cd .. |  | 
|  | mkdir run |  | 
|  | cd run |  | 
|  | \rm * |  | 
|  | \cp ../input/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/input/* . |  | 
|  | qsub job_orion |  | 
|  |  |  | 
|  |  |  | 
|  | ########################################################################## |  | 
|  | ########################################################################## |  | 
|  | # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc |  | 
|  | # requires input files in sudirectories run_template and ncep_rgau |  | 
|  | # presently residing under orion:/tmp1/dmenem/cube |  | 
|  |  |  | 
|  | cd MITgcm/verification/global_ocean.cs32x15/code |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* . |  | 
|  | \cp SIZE.h_41 SIZE.h |  | 
|  | \cp packages.conf_hr packages.conf |  | 
|  |  |  | 
|  | cd ../build |  | 
|  | \rm * |  | 
|  | ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |  | 
|  | make depend |  | 
|  | make -j |  | 
|  |  |  | 
|  | cd .. |  | 
|  | mkdir run |  | 
|  | cd run |  | 
|  | \rm * |  | 
|  | \cp ../input/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/input/* . |  | 
|  | qsub job_orion41 |  | 
|  |  |  | 
|  |  |  | 
|  | ########################################################################## |  | 
|  | ########################################################################## |  | 
|  | # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc |  | 
|  | # requires input files in sudirectories run_template and ncep_rgau |  | 
|  | # presently residing under orion:/tmp1/dmenem/cube |  | 
|  |  |  | 
|  | cd MITgcm/verification/global_ocean.cs32x15/code |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |  | 
|  | \cp SIZE.h_50 SIZE.h |  | 
|  | \cp packages.conf_hr packages.conf |  | 
|  |  |  | 
|  | cd ../build |  | 
|  | \rm * |  | 
|  | ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |  | 
|  | make depend |  | 
|  | make -j |  | 
|  |  |  | 
|  | cd .. |  | 
|  | mkdir run |  | 
|  | cd run |  | 
|  | \rm * |  | 
|  | \cp ../input/* . |  | 
|  | \cp ../../../../MITgcm_contrib/high_res_cube/input/* . |  | 
|  | qsub job_orion |  |