Instructions for setting up a cube-sphere integration with sea-ice.

Forcing fields and other input files needed for the CS510
configuration can be obtained from
http://ecco2.org/products/model_setups/cs510.html

=================

UPDATES

June 13, 2008. Cube 81 - same as cube79 but with
   1. salt plume package turned on
   2. new values for data.seaice and data.exf
   3. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
   4. GMRedi turned off

December 22, 2007. Cube80 - same as cube79 but with
   SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
   ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
   ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
December 2, 2007. Cube79 - same as cube78 (blend3) but with
   useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
November 22, 2007. Cube 78 - blend 3
November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
                            and era40_ecmwf_blend/cube59_GPCP forcing
November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration
August 31, 2007.  Cube75 - the second blend.
August 9, 2007. Cube74
August 6, 2007. Cube73
July 24, 2007. Cube72
July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT,
   rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6
   useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10
   bathyFile=GEBCO_510x6x510_ver06_dig.bin, HeffFile=heff_file8
   SEAICE_availHeatFrac=.5, useGMRedi=.TRUE.
April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity
   (cube67, cube68, and cube69 were carried out with cube65 code)
April 7 , 2007. Cube64: era40_fullres forcing


##########################################################################
# Get forcing files, etc.
# Example below is for cube81 on /nobackup2a/menemenl

cd /nobackup2a/menemenl
mkdir cube81
cd cube81
ln -sf ../run_template .
ln -sf ../cube78_forcing .
ln -sf ../ncep_rgau/ .


##########################################################################
# getting the code from anonymous CVS server

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README.cs510
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_code


##########################################################################
# 510*510*6*50, 450-cpu cube sphere on altix with ifort

cd MITgcm
mkdir build run
cd build
\rm *
\cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../MITgcm_contrib/high_res_cube/code-mods/s1350t_34x34/* .
\mv SIZE.h_450 SIZE.h 
../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas
make depend
make -j
cd ../run
\rm *
\cp ../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../run_template/* .
\rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC*
\mv data.exf_hr data.exf
\mv data_hr data
ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216
ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216
ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta
ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta
\cp ../build/mitgcmuv .
\mv job_altix cube81
qsub cube81


##########################################################################
# generating initial pickup files for cube78

data
# run for 4 days from time step 216 with 2-min time step
 endtime=345600.,
 deltaT=120.,
 pChkptFreq=345600.,
 monitorFreq=1.,

cd ../../run_template
mv pickup.0000000216.cube78 pickup.0000000216.cube78_raw
mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216.cube78_raw
cd ../cube78/MITgcm/run
\mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube78
\mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube78
\mv pickup.0000002880.meta ../../run_template/pickup.0000000216.meta.cube78
\mv pickup_seaice.0000002880.meta ../../run_template/pickup_seaice.0000000216.meta.cube78
\rm *.meta *.data STD* cube78.o*
\cp ../../MITgcm_contrib/high_res_cube/input/data_hr data
ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216
ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216
ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta
ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta
qsub cube78