/[MITgcm]/MITgcm_contrib/high_res_cube/README.cs510
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revision 1.27 by dimitri, Sun Nov 4 20:22:00 2007 UTC revision 1.43 by dimitri, Thu Jun 18 18:29:51 2009 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
 Forcing fields and other input files needed for the CS510  
 configuration can be obtained from  
 http://ecco2.org/products/model_setups/cs510.html  
   
3  =================  =================
4    
5  UPDATES  UPDATES
6    
7  November 3, 2007. Cube 76 - 1979-2006 integration  June 16, 2009. Cube85 -same as cube84 but with:
8       1. split north/south data.seaice parameters from regional optimizations
9       2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
10       3. initialize from T/S/U/V/ETAN and sea ice files
11       4. 3-day 3D diagnostics
12       5. SEAICE_no_slip=.TRUE. to keep code stable
13    
14    June 13, 2008. Cube 81 - same as cube79 but with
15       1. new values for data.seaice and data.exf
16       2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
17       3. GMRedi turned off
18    
19    December 22, 2007. Cube80 - same as cube79 but with
20       SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
21       ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
22       ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
23    December 2, 2007. Cube79 - same as cube78 (blend3) but with
24       useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
25    November 22, 2007. Cube 78 - blend 3
26    November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
27                                and era40_ecmwf_blend/cube59_GPCP forcing
28    November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration
29  August 31, 2007.  Cube75 - the second blend.  August 31, 2007.  Cube75 - the second blend.
30  August 9, 2007. Cube74  August 9, 2007. Cube74
31  August 6, 2007. Cube73  August 6, 2007. Cube73
# Line 25  April 7 , 2007. Cube64: era40_fullres fo Line 42  April 7 , 2007. Cube64: era40_fullres fo
42    
43  ##########################################################################  ##########################################################################
44  # Get forcing files, etc.  # Get forcing files, etc.
45  # Example below is for cube76 on /nobackup2a/menemenl  # Example below is for cube85 on /nobackup2a/menemenl
46    
47  cd /nobackup2a/menemenl  cd /nobackup2a/menemenl
48  mkdir cube76  mkdir cube85
49  cd cube76  cd cube85
50  ln -sf ../run_template .  ln -sf ../run_template .
51  ln -sf ../cube59_GPCP .  ln -sf ../../forcing/cube78_forcing .
52  ln -sf ../cube59_GPCP .  
 ln -sf ../era40_ecmwf_blend .  
 ln -sf ../ncep_rgau .  
53    
54  ##########################################################################  ##########################################################################
55  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
56    
   bash or sh shell:  
     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
   tcsh or csh shell:  
     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
57  cvs co MITgcm_contrib/high_res_cube/README.cs510  cvs co MITgcm_contrib/high_res_cube/README.cs510
58  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
59  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
# Line 56  cvs co MITgcm_code Line 61  cvs co MITgcm_code
61    
62    
63  ##########################################################################  ##########################################################################
64  # 510*510*6*50, 216-cpu cube sphere on altix with ifort  # 510*510*6*50, 450-cpu cube sphere on altix with ifort
65    
66  cd MITgcm  cd MITgcm
67  mkdir build run  mkdir build run
68  cd build  cd build
69  \rm *  \rm *
70  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
71  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/SIZE.h_216 SIZE.h
72  \cp SIZE.h_216 SIZE.h  ../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas
 ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas  
73  make depend  make depend
74  make -j  make -j 8
75  cd ../run  cd ../run
76  \rm *  \rm *
77  \cp ../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../MITgcm_contrib/high_res_cube/input/* .
78  ln -sf ../../run_template/* .  \ln -sf ../../run_template/* .
79  \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC*JAN*  \rm *192_94* *.m heff_* pickup* A* D* E* G*all.bin L* P* W*
80    \mv data.seaice_hr data.seaice
81  \mv data.exf_hr data.exf  \mv data.exf_hr data.exf
82  \mv data_hr data  \mv data_hr data
 ln -sf ../../run_template/pickup.0000000216.cube75 pickup.0000000216  
 ln -sf ../../run_template/pickup_seaice.0000000216.cube76 pickup_seaice.0000000216  
83  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
84  \mv job_altix cube76  \mv job_altix cube85
85  qsub cube76  qsub cube85
   
   
 ##########################################################################  
 # generating initial pickup files for cube74  
   
 data.cal  
 # start on December 30 because of bug that does  
 # not allow a January 1, hour 0 start  
  startDate_1=19881230,  
   
 data  
 # run for 4 days with 2-min time step  
  niter0=0,  
  endtime=345600.,  
  deltaT=120.,  
  pChkptFreq=345600.,  
  monitorFreq=1.,  
   
 data.seaice  
 # set SEAICE_salinity to 33 to avoid initialization schock if  
 # ice is created or melts during first time step  
       HeffFile           = 'heff_file8',  
       SEAICE_salinity    = 33.,  
   
 \mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube74  
 \mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube74  
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