/[MITgcm]/MITgcm_contrib/high_res_cube/README.cs510
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revision 1.41 by dimitri, Wed Jul 2 16:50:34 2008 UTC revision 1.50 by dimitri, Thu Aug 19 14:31:58 2010 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
 Forcing fields and other input files needed for the CS510  
 configuration can be obtained from  
 http://ecco2.org/products/model_setups/cs510.html  
   
3  =================  =================
4    
5  UPDATES  UPDATES
6    
7    July 27, 2010.  Cube88 on pleiades - same as cube84 but with:
8       1. JRA25 instead of cube84 blend forcing
9       2. useSALT_PLUME  = .TRUE., (off in Southern Ocean)
10       3. useDOWN_SLOPE  = .TRUE.,
11       4. split north/south data.sec17saice parameters from regional optimizations
12       5. initialize from T/S/U/V/ETAN and sea ice from cube78 Jan 1992 pickup
13       6. 3-day 3D diagnostics
14       7. SEAICE_no_slip = .TRUE. to keep code stable
15    
16    June 30, 2009.  Cube86 -same as cube85 but with:
17       1. updated Southern OCean Bathymetry
18       2. ice shelf cavities
19    
20    June 16, 2009. Cube85 -same as cube84 but with:
21       1. split north/south data.seaice parameters from regional optimizations
22       2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
23       3. initialize from T/S/U/V/ETAN and sea ice files
24       4. 3-day 3D diagnostics
25       5. SEAICE_no_slip=.TRUE. to keep code stable
26    
27  June 13, 2008. Cube 81 - same as cube79 but with  June 13, 2008. Cube 81 - same as cube79 but with
28     1. salt plume package turned on     1. new values for data.seaice and data.exf
29     2. new values for data.seaice and data.exf     2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
30     3. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic     3. GMRedi turned off
    4. GMRedi turned off  
31    
32  December 22, 2007. Cube80 - same as cube79 but with  December 22, 2007. Cube80 - same as cube79 but with
33     SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)     SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
# Line 40  April 7 , 2007. Cube64: era40_fullres fo Line 55  April 7 , 2007. Cube64: era40_fullres fo
55    
56  ##########################################################################  ##########################################################################
57  # Get forcing files, etc.  # Get forcing files, etc.
58  # Example below is for cube81 on /nobackup2a/menemenl  # Example below is for cube88 on pleiades
59    
60  cd /nobackup2a/menemenl  mkdir cube88
61  mkdir cube81  cd cube88
62  cd cube81  ln -sf /nobackupp10/hzhang1/cs510/run_template .
63  ln -sf ../run_template .  ln -sf /nobackupp10/hzhang1/forcing/jra25 .
64  ln -sf ../cube78_forcing .  ln -sf /nobackupp10/hzhang1/forcing/cube78_forcing .
 ln -sf ../ncep_rgau/ .  
65    
66    
67  ##########################################################################  ##########################################################################
68  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
69    
   bash or sh shell:  
     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
   tcsh or csh shell:  
     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
70  cvs co MITgcm_contrib/high_res_cube/README.cs510  cvs co MITgcm_contrib/high_res_cube/README.cs510
71  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
72  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
# Line 70  cvs co MITgcm_code Line 74  cvs co MITgcm_code
74    
75    
76  ##########################################################################  ##########################################################################
77  # 510*510*6*50, 450-cpu cube sphere on altix with ifort  # 510*510*6*50, 450-cpu cube sphere on pleiades with ifort
78    
79  cd MITgcm  cd MITgcm
80  mkdir build run  mkdir build run
81  cd build  cd build
82  \rm *  \rm *
83  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
84  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s1350t_34x34/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s450t_34x102/SIZE.h .
85  \mv SIZE.h_450 SIZE.h  \rm README SIZE.h_mpi
86  ../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas
87  make depend  make depend
88  make -j  make -j 16
89  cd ../run  cd ../run
90  \rm *  \rm *
91  \cp ../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../MITgcm_contrib/high_res_cube/input/*data* .
92  ln -sf ../../run_template/* .  \cp ../../MITgcm_contrib/high_res_cube/input/modpickup .
93  \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC*  \cp ../../MITgcm_contrib/high_res_cube/input/job* .
94    \mv data.seaice_hr data.seaice
95  \mv data.exf_hr data.exf  \mv data.exf_hr data.exf
96  \mv data_hr data  \mv data_hr data
97  ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216  \ln -sf ../../run_template/tile* .
98  ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216  \ln -sf ../../run_template/G*dig* .
99  ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta  \ln -sf ../../run_template/*Init.cube78 .
 ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta  
100  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
101  \mv job_altix cube81  qsub job_cs510_pleiades450
 qsub cube81  
   
   
 ##########################################################################  
 # generating initial pickup files for cube78  
   
 data  
 # run for 4 days from time step 216 with 2-min time step  
  endtime=345600.,  
  deltaT=120.,  
  pChkptFreq=345600.,  
  monitorFreq=1.,  
   
 cd ../../run_template  
 mv pickup.0000000216.cube78 pickup.0000000216.cube78_raw  
 mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216.cube78_raw  
 cd ../cube78/MITgcm/run  
 \mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube78  
 \mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube78  
 \mv pickup.0000002880.meta ../../run_template/pickup.0000000216.meta.cube78  
 \mv pickup_seaice.0000002880.meta ../../run_template/pickup_seaice.0000000216.meta.cube78  
 \rm *.meta *.data STD* cube78.o*  
 \cp ../../MITgcm_contrib/high_res_cube/input/data_hr data  
 ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216  
 ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216  
 ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta  
 ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta  
 qsub cube78  
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