/[MITgcm]/MITgcm_contrib/high_res_cube/README.cs510
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revision 1.31 by dimitri, Thu Nov 22 16:51:41 2007 UTC revision 1.41 by dimitri, Wed Jul 2 16:50:34 2008 UTC
# Line 8  http://ecco2.org/products/model_setups/c Line 8  http://ecco2.org/products/model_setups/c
8    
9  UPDATES  UPDATES
10    
11  November 22, 2007. Cube 78 - blend 3 test  June 13, 2008. Cube 81 - same as cube79 but with
12       1. salt plume package turned on
13       2. new values for data.seaice and data.exf
14       3. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
15       4. GMRedi turned off
16    
17    December 22, 2007. Cube80 - same as cube79 but with
18       SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
19       ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
20       ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
21    December 2, 2007. Cube79 - same as cube78 (blend3) but with
22       useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
23    November 22, 2007. Cube 78 - blend 3
24  November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY  November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
25                              and era40_ecmwf_blend/cube59_GPCP forcing                              and era40_ecmwf_blend/cube59_GPCP forcing
26  November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration  November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration
# Line 28  April 7 , 2007. Cube64: era40_fullres fo Line 40  April 7 , 2007. Cube64: era40_fullres fo
40    
41  ##########################################################################  ##########################################################################
42  # Get forcing files, etc.  # Get forcing files, etc.
43  # Example below is for cube78 on /nobackup2a/menemenl  # Example below is for cube81 on /nobackup2a/menemenl
44    
45  cd /nobackup2a/menemenl  cd /nobackup2a/menemenl
46  mkdir cube78  mkdir cube81
47  cd cube78  cd cube81
48  ln -sf ../run_template .  ln -sf ../run_template .
49  ln -sf ../cube78_forcing .  ln -sf ../cube78_forcing .
50    ln -sf ../ncep_rgau/ .
51    
52    
53  ##########################################################################  ##########################################################################
54  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
# Line 56  cvs co MITgcm_code Line 70  cvs co MITgcm_code
70    
71    
72  ##########################################################################  ##########################################################################
73  # 510*510*6*50, 216-cpu cube sphere on altix with ifort  # 510*510*6*50, 450-cpu cube sphere on altix with ifort
74    
75  cd MITgcm  cd MITgcm
76  mkdir build run  mkdir build run
77  cd build  cd build
78  \rm *  \rm *
79  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
80  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s1350t_34x34/* .
81  \cp SIZE.h_216 SIZE.h  \mv SIZE.h_450 SIZE.h
82  ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas  ../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas
83  make depend  make depend
84  make -j  make -j
85  cd ../run  cd ../run
# Line 77  ln -sf ../../run_template/* . Line 91  ln -sf ../../run_template/* .
91  \mv data_hr data  \mv data_hr data
92  ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216  ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216
93  ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216  ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216
94  ln -sf ../../run_template/pickup.0000000216.meta .  ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta
95  ln -sf ../../run_template/pickup_seaice.0000000216.meta .  ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta
96  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
97  \mv job_altix cube78  \mv job_altix cube81
98  qsub cube78  qsub cube81
99    
100    
101  ##########################################################################  ##########################################################################
102  # generating initial pickup files for cube74  # generating initial pickup files for cube78
   
 data.cal  
 # start on December 30 because of bug that does  
 # not allow a January 1, hour 0 start  
  startDate_1=19881230,  
103    
104  data  data
105  # run for 4 days with 2-min time step  # run for 4 days from time step 216 with 2-min time step
  niter0=0,  
106   endtime=345600.,   endtime=345600.,
107   deltaT=120.,   deltaT=120.,
108   pChkptFreq=345600.,   pChkptFreq=345600.,
109   monitorFreq=1.,   monitorFreq=1.,
110    
111  data.seaice  cd ../../run_template
112  # set SEAICE_salinity to 33 to avoid initialization schock if  mv pickup.0000000216.cube78 pickup.0000000216.cube78_raw
113  # ice is created or melts during first time step  mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216.cube78_raw
114        HeffFile           = 'heff_file8',  cd ../cube78/MITgcm/run
115        SEAICE_salinity    = 33.,  \mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube78
116    \mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube78
117  \mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube74  \mv pickup.0000002880.meta ../../run_template/pickup.0000000216.meta.cube78
118  \mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube74  \mv pickup_seaice.0000002880.meta ../../run_template/pickup_seaice.0000000216.meta.cube78
119    \rm *.meta *.data STD* cube78.o*
120    \cp ../../MITgcm_contrib/high_res_cube/input/data_hr data
121    ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216
122    ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216
123    ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta
124    ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta
125    qsub cube78
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