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Instructions for setting up a cube-sphere integration with sea-ice. |
Instructions for setting up a cube-sphere integration with sea-ice. |
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Forcing fields and other input files needed for the CS510 |
########################################################################## |
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configuration can be obtained from |
# Get forcing files, etc. |
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http://ecco2.org/products/model_setups/cs510.html |
# Example below is for cube88 on pleiades |
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mkdir cube94 |
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cd cube94 |
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ln -sf /nobackupp10/hzhang1/cs510/run_template . |
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ln -sf /nobackupp10/hzhang1/forcing/jra25 . |
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ln -sf /nobackupp10/hzhang1/forcing/cube78_forcing . |
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########################################################################## |
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# getting the code from anonymous CVS server |
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cvs co MITgcm_contrib/high_res_cube/README.cs510 |
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cvs co MITgcm_contrib/high_res_cube/code-mods |
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cvs co MITgcm_contrib/high_res_cube/input |
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cvs co MITgcm_code |
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########################################################################## |
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# 510*510*6*50, 450-cpu cube sphere on pleiades with ifort |
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cd MITgcm |
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mkdir build run |
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cd build |
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\rm * |
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\cp ../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../MITgcm_contrib/high_res_cube/code-mods/s450t_34x102/SIZE.h . |
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\rm README SIZE.h_mpi |
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../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas |
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make depend |
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make -j 16 |
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cd ../run |
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\rm * |
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\cp ../../MITgcm_contrib/high_res_cube/input/*data* . |
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\cp ../../MITgcm_contrib/high_res_cube/input/modpickup . |
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\cp ../../MITgcm_contrib/high_res_cube/input/job* . |
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\mv data.seaice_hr data.seaice |
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\mv data.exf_hr data.exf |
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\mv data_hr data |
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\ln -sf ../../run_template/tile* . |
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\ln -sf ../../run_template/G*dig* . |
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\ln -sf ../../run_template/*Init.cube78 . |
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\cp ../build/mitgcmuv . |
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qsub job_cs510_pleiades450 |
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================= |
================= |
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UPDATES |
UPDATES |
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March 19, 2012. Cube94 on pleiades |
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This integration is driven by JRA25 (as was cube92) |
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but it includes shelfice (as did cube86), |
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it is based on MITgcm > checkpoint63k (that is post ICE workshop code), |
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it uses optimized Arctic sea ice parameters from |
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http://ecco2.jpl.nasa.gov/data1/arctic/output/newcode_050109/JRA25_OPT3/input/data.seaice |
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http://ecco2.org/manuscripts/2011/NguyenJGR2011.pdf |
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it uses Southern Ocean ice and ice shelf parameters from JSO24 |
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/data14/scratch/hzhang/CP/JSO24/input |
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(bathymetry and initial conditions tbd), |
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and it uses pkg/bbl and frazil instead of down_slope |
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July 27, 2010. Cube88 on pleiades - same as cube84 but with: |
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1. JRA25 instead of cube84 blend forcing |
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2. useSALT_PLUME = .TRUE., (off in Southern Ocean) |
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3. useDOWN_SLOPE = .TRUE., |
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4. split north/south data.sec17saice parameters from regional optimizations |
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5. initialize from T/S/U/V/ETAN and sea ice from cube78 Jan 1992 pickup |
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6. 3-day 3D diagnostics |
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7. SEAICE_no_slip = .TRUE. to keep code stable |
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June 30, 2009. Cube86 -same as cube85 but with: |
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1. updated Southern OCean Bathymetry |
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2. ice shelf cavities |
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June 16, 2009. Cube85 -same as cube84 but with: |
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1. split north/south data.seaice parameters from regional optimizations |
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2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally |
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3. initialize from T/S/U/V/ETAN and sea ice files |
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4. 3-day 3D diagnostics |
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5. SEAICE_no_slip=.TRUE. to keep code stable |
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June 13, 2008. Cube 81 - same as cube79 but with |
June 13, 2008. Cube 81 - same as cube79 but with |
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1. salt plume package turned on |
1. new values for data.seaice and data.exf |
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2. new values for data.seaice and data.exf |
2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic |
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3. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic |
3. GMRedi turned off |
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4. GMRedi turned off |
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December 22, 2007. Cube80 - same as cube79 but with |
December 22, 2007. Cube80 - same as cube79 but with |
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SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea) |
SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea) |
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(cube67, cube68, and cube69 were carried out with cube65 code) |
(cube67, cube68, and cube69 were carried out with cube65 code) |
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April 7 , 2007. Cube64: era40_fullres forcing |
April 7 , 2007. Cube64: era40_fullres forcing |
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February 6, 2006: cube56, same as cube 50 with SEAICEuseFlooding |
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########################################################################## |
February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.002) |
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# Get forcing files, etc. |
removed UVEL and VVEL from diagnostics |
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# Example below is for cube81 on /nobackup2a/menemenl |
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cd /nobackup2a/menemenl |
January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012 |
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mkdir cube81 |
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cd cube81 |
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ln -sf ../run_template . |
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ln -sf ../cube78_forcing . |
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ln -sf ../ncep_rgau/ . |
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January 5, 2006: cube50, like cube48 but with snow advection |
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########################################################################## |
December 30, 2006: updates for cube49, the first |
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# getting the code from anonymous CVS server |
"blend" integration. |
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bash or sh shell: |
December 11, 2006: preparing for cube47, same as cube43 |
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$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
but with Arctic monthly river runoff climatology. |
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$ cvs login |
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( enter the CVS password: "cvsanon" ) |
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tcsh or csh shell: |
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$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
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$ cvs login |
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( enter the CVS password: "cvsanon" ) |
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cvs co MITgcm_contrib/high_res_cube/README.cs510 |
December 5, 2006: 216-CPU code for cube46 |
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cvs co MITgcm_contrib/high_res_cube/code-mods |
Changed diagnostics to accomodate JMCs latest and some |
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cvs co MITgcm_contrib/high_res_cube/input |
changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h |
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cvs co MITgcm_code |
to speed up code. |
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November 7, 2006: 216-CPU code for cube43 |
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Bug fixes in growth.F routine and new set of diagnostics |
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########################################################################## |
October 15, 2006: 216-CPU code for cube40 |
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# 510*510*6*50, 450-cpu cube sphere on altix with ifort |
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cd MITgcm |
September 28, 2006: 216-CPU code for cube38 |
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mkdir build run |
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cd build |
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\rm * |
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\cp ../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../MITgcm_contrib/high_res_cube/code-mods/s1800t_17x51/* . |
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\mv SIZE.h_450 SIZE.h |
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../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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cd ../run |
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\rm * |
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\cp ../../MITgcm_contrib/high_res_cube/input/* . |
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ln -sf ../../run_template/* . |
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\rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC* |
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\mv data.exf_hr data.exf |
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\mv data_hr data |
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ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216 |
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ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 |
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ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta |
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ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta |
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\cp ../build/mitgcmuv . |
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\mv job_altix cube81 |
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qsub cube81 |
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September 4, 2006 |
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Modified 32*32*6*15 experiments to use grid_cs32.* files from |
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verification/tutorial_held_suarez_cs/input instead of |
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tile* files from verification/global_ocean.cs32x15/input |
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########################################################################## |
August 8, 2006: 216-CPU code and input used for cube37 |
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# generating initial pickup files for cube78 |
using "June 10, 2006" MITgcm code. |
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data |
for online T/S profile diagnostics all that is needed is |
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# run for 4 days from time step 216 with 2-min time step |
profiles_init_fixed |
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endtime=345600., |
profiles_inloop |
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deltaT=120., |
see pkg/ecco/ecco_cost_init_fixed.F |
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pChkptFreq=345600., |
pkg/ecco/cost_averagesfields.F |
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monitorFreq=1., |
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cd ../../run_template |
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mv pickup.0000000216.cube78 pickup.0000000216.cube78_raw |
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mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216.cube78_raw |
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cd ../cube78/MITgcm/run |
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\mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube78 |
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\mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube78 |
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\mv pickup.0000002880.meta ../../run_template/pickup.0000000216.meta.cube78 |
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\mv pickup_seaice.0000002880.meta ../../run_template/pickup_seaice.0000000216.meta.cube78 |
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\rm *.meta *.data STD* cube78.o* |
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\cp ../../MITgcm_contrib/high_res_cube/input/data_hr data |
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ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216 |
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ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 |
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ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta |
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ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta |
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qsub cube78 |
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