/[MITgcm]/MITgcm_contrib/high_res_cube/README.cs510
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revision 1.39 by dimitri, Fri Jun 13 19:28:48 2008 UTC revision 1.44 by dimitri, Fri Jun 19 16:53:09 2009 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
 Forcing fields and other input files needed for the CS510  
 configuration can be obtained from  
 http://ecco2.org/products/model_setups/cs510.html  
   
3  =================  =================
4    
5  UPDATES  UPDATES
6    
7    June 16, 2009. Cube85 -same as cube84 but with:
8       1. split north/south data.seaice parameters from regional optimizations
9       2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
10       3. initialize from T/S/U/V/ETAN and sea ice files
11       4. 3-day 3D diagnostics
12       5. SEAICE_no_slip=.TRUE. to keep code stable
13    
14  June 13, 2008. Cube 81 - same as cube79 but with  June 13, 2008. Cube 81 - same as cube79 but with
15     1. salt plume package turned on     1. new values for data.seaice and data.exf
16     2. new values for data.seaice and data.exf     2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
17     3. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic     3. GMRedi turned off
    4. GMRedi turned off  
18    
19  December 22, 2007. Cube80 - same as cube79 but with  December 22, 2007. Cube80 - same as cube79 but with
20     SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)     SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
# Line 40  April 7 , 2007. Cube64: era40_fullres fo Line 42  April 7 , 2007. Cube64: era40_fullres fo
42    
43  ##########################################################################  ##########################################################################
44  # Get forcing files, etc.  # Get forcing files, etc.
45  # Example below is for cube81 on /nobackup2a/menemenl  # Example below is for cube85 on /nobackup2a/menemenl
46    
47  cd /nobackup2a/menemenl  cd /nobackup2a/menemenl/cs510
48  mkdir cube81  mkdir cube85
49  cd cube81  cd cube85
50  ln -sf ../run_template .  ln -sf ../run_template .
51  ln -sf ../cube78_forcing .  ln -sf ../../forcing/cube78_forcing .
 ln -sf ../ncep_rgau/ .  
52    
53    
54  ##########################################################################  ##########################################################################
55  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
56    
   bash or sh shell:  
     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
   tcsh or csh shell:  
     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
57  cvs co MITgcm_contrib/high_res_cube/README.cs510  cvs co MITgcm_contrib/high_res_cube/README.cs510
58  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
59  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
# Line 77  mkdir build run Line 68  mkdir build run
68  cd build  cd build
69  \rm *  \rm *
70  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
71  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s1800t_17x51/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/SIZE.h_216 SIZE.h
72  \mv SIZE.h_450 SIZE.h  ../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas
 ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas  
73  make depend  make depend
74  make -j  make -j 8
75  cd ../run  cd ../run
76  \rm *  \rm *
77  \cp ../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../MITgcm_contrib/high_res_cube/input/* .
78  ln -sf ../../run_template/* .  \ln -sf ../../run_template/* .
79  \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC*  \rm *192_94* *.m heff_* pickup* A* D* E* G*all.bin L* P* W*
80    \mv data.seaice_hr data.seaice
81  \mv data.exf_hr data.exf  \mv data.exf_hr data.exf
82  \mv data_hr data  \mv data_hr data
 ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216  
 ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216  
 ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta  
 ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta  
83  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
84  \mv job_altix cube81  \mv job_altix cube85
85  qsub cube81  qsub cube85
   
   
 ##########################################################################  
 # generating initial pickup files for cube78  
   
 data  
 # run for 4 days from time step 216 with 2-min time step  
  endtime=345600.,  
  deltaT=120.,  
  pChkptFreq=345600.,  
  monitorFreq=1.,  
   
 cd ../../run_template  
 mv pickup.0000000216.cube78 pickup.0000000216.cube78_raw  
 mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216.cube78_raw  
 cd ../cube78/MITgcm/run  
 \mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube78  
 \mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube78  
 \mv pickup.0000002880.meta ../../run_template/pickup.0000000216.meta.cube78  
 \mv pickup_seaice.0000002880.meta ../../run_template/pickup_seaice.0000000216.meta.cube78  
 \rm *.meta *.data STD* cube78.o*  
 \cp ../../MITgcm_contrib/high_res_cube/input/data_hr data  
 ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216  
 ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216  
 ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta  
 ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta  
 qsub cube78  
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