/[MITgcm]/MITgcm_contrib/high_res_cube/README.cs510
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revision 1.31 by dimitri, Thu Nov 22 16:51:41 2007 UTC revision 1.49 by dimitri, Wed Jul 28 22:48:02 2010 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
 Forcing fields and other input files needed for the CS510  
 configuration can be obtained from  
 http://ecco2.org/products/model_setups/cs510.html  
   
3  =================  =================
4    
5  UPDATES  UPDATES
6    
7  November 22, 2007. Cube 78 - blend 3 test  July 27, 2010.  Cube88 on pleiades - same as cube84 but with:
8       1. JRA25 instead of cube84 blend forcing
9       2. useSALT_PLUME  = .TRUE., (off in Southern Ocean)
10       3. useDOWN_SLOPE  = .TRUE.,
11       4. split north/south data.sec17saice parameters from regional optimizations
12       5. initialize from T/S/U/V/ETAN and sea ice from cube78 Jan 1992 pickup
13       6. 3-day 3D diagnostics
14       7. SEAICE_no_slip = .TRUE. to keep code stable
15    
16    June 30, 2009.  Cube86 -same as cube85 but with:
17       1. updated Southern OCean Bathymetry
18       2. ice shelf cavities
19    
20    June 16, 2009. Cube85 -same as cube84 but with:
21       1. split north/south data.seaice parameters from regional optimizations
22       2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
23       3. initialize from T/S/U/V/ETAN and sea ice files
24       4. 3-day 3D diagnostics
25       5. SEAICE_no_slip=.TRUE. to keep code stable
26    
27    June 13, 2008. Cube 81 - same as cube79 but with
28       1. new values for data.seaice and data.exf
29       2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
30       3. GMRedi turned off
31    
32    December 22, 2007. Cube80 - same as cube79 but with
33       SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
34       ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
35       ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
36    December 2, 2007. Cube79 - same as cube78 (blend3) but with
37       useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
38    November 22, 2007. Cube 78 - blend 3
39  November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY  November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
40                              and era40_ecmwf_blend/cube59_GPCP forcing                              and era40_ecmwf_blend/cube59_GPCP forcing
41  November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration  November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration
# Line 28  April 7 , 2007. Cube64: era40_fullres fo Line 55  April 7 , 2007. Cube64: era40_fullres fo
55    
56  ##########################################################################  ##########################################################################
57  # Get forcing files, etc.  # Get forcing files, etc.
58  # Example below is for cube78 on /nobackup2a/menemenl  # Example below is for cube88 on pleiades
59    
60    mkdir cube88
61    cd cube88
62    ln -sf /nobackupp10/hzhang1/cs510/run_template .
63    ln -sf /nobackupp10/hzhang1/forcing/jra25 .
64    ln -sf /nobackupp10/hzhang1/forcing/cube78_forcing .
65    
 cd /nobackup2a/menemenl  
 mkdir cube78  
 cd cube78  
 ln -sf ../run_template .  
 ln -sf ../cube78_forcing .  
66    
67  ##########################################################################  ##########################################################################
68  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
69    
   bash or sh shell:  
     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
   tcsh or csh shell:  
     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
70  cvs co MITgcm_contrib/high_res_cube/README.cs510  cvs co MITgcm_contrib/high_res_cube/README.cs510
71  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
72  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
# Line 56  cvs co MITgcm_code Line 74  cvs co MITgcm_code
74    
75    
76  ##########################################################################  ##########################################################################
77  # 510*510*6*50, 216-cpu cube sphere on altix with ifort  # 510*510*6*50, 450-cpu cube sphere on pleiades with ifort
78    
79  cd MITgcm  cd MITgcm
80  mkdir build run  mkdir build run
81  cd build  cd build
82  \rm *  \rm *
83  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
84  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s450t_34x102/SIZE.h .
85  \cp SIZE.h_216 SIZE.h  \rm README SIZE.h_mpi rotate_en_to_uv.F
86  ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas
87  make depend  make depend
88  make -j  make -j 16
89  cd ../run  cd ../run
90  \rm *  \rm *
91  \cp ../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../MITgcm_contrib/high_res_cube/input/*data* .
92  ln -sf ../../run_template/* .  \cp ../../MITgcm_contrib/high_res_cube/input/modpickup .
93  \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC*  \cp ../../MITgcm_contrib/high_res_cube/input/job* .
94    \mv data.seaice_hr data.seaice
95  \mv data.exf_hr data.exf  \mv data.exf_hr data.exf
96  \mv data_hr data  \mv data_hr data
97  ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216  \ln -sf ../../run_template/tile* .
98  ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216  \ln -sf ../../run_template/G*dig* .
99  ln -sf ../../run_template/pickup.0000000216.meta .  \ln -sf ../../run_template/*Init.cube78 .
 ln -sf ../../run_template/pickup_seaice.0000000216.meta .  
100  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
101  \mv job_altix cube78  qsub job_cs510_pleiades450
 qsub cube78  
   
   
 ##########################################################################  
 # generating initial pickup files for cube74  
   
 data.cal  
 # start on December 30 because of bug that does  
 # not allow a January 1, hour 0 start  
  startDate_1=19881230,  
   
 data  
 # run for 4 days with 2-min time step  
  niter0=0,  
  endtime=345600.,  
  deltaT=120.,  
  pChkptFreq=345600.,  
  monitorFreq=1.,  
   
 data.seaice  
 # set SEAICE_salinity to 33 to avoid initialization schock if  
 # ice is created or melts during first time step  
       HeffFile           = 'heff_file8',  
       SEAICE_salinity    = 33.,  
   
 \mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube74  
 \mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube74  
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