/[MITgcm]/MITgcm_contrib/high_res_cube/README.cs510
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revision 1.30 by dimitri, Thu Nov 8 05:23:55 2007 UTC revision 1.52 by dimitri, Thu Dec 6 00:26:42 2012 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
3  Forcing fields and other input files needed for the CS510  ##########################################################################
4  configuration can be obtained from  # Get forcing files, etc.
5  http://ecco2.org/products/model_setups/cs510.html  # Example below is for cube94 on pleiades
6    
7    mkdir cube94
8    cd cube94
9    ln -sf /nobackupp10/hzhang1/cs510/run_template .
10    ln -sf /nobackupp10/hzhang1/forcing/jra25 .
11    ln -sf /nobackupp10/hzhang1/forcing/cube78_forcing .
12    
13    
14    ##########################################################################
15    # getting the code from anonymous CVS server
16    
17    cvs co MITgcm_contrib/high_res_cube/README.cs510
18    cvs co MITgcm_contrib/high_res_cube/code-mods
19    cvs co MITgcm_contrib/high_res_cube/input
20    cvs co MITgcm_code
21    
22    
23    ##########################################################################
24    # 510*510*6*50, 450-cpu cube sphere on pleiades with ifort
25    
26    cd MITgcm
27    mkdir build run
28    cd build
29    \rm *
30    \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
31    \cp ../../MITgcm_contrib/high_res_cube/code-mods/s450t_34x102/SIZE.h .
32    \rm README SIZE.h_mpi
33    ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas
34    make depend
35    make -j 16
36    cd ../run
37    \rm *
38    \cp ../../MITgcm_contrib/high_res_cube/input/*data* .
39    \cp ../../MITgcm_contrib/high_res_cube/input/modpickup .
40    \cp ../../MITgcm_contrib/high_res_cube/input/job* .
41    \mv data.seaice_hr data.seaice
42    \mv data.exf_hr data.exf
43    \mv data_hr data
44    \ln -sf ../../run_template/tile* .
45    \ln -sf ../../run_template/G*dig* .
46    \ln -sf ../../run_template/*Init.cube78 .
47    \cp ../build/mitgcmuv .
48    qsub job_cs510_pleiades450
49    
50  =================  =================
51    
52  UPDATES  UPDATES
53    
54    March 19, 2012. Cube94 on pleiades
55    This integration is driven by JRA25 (as was cube92)
56    but it includes shelfice (as did cube86),
57    it is based on MITgcm > checkpoint63k (that is post ICE workshop code),
58    it uses optimized Arctic sea ice parameters from
59    http://ecco2.jpl.nasa.gov/data1/arctic/output/newcode_050109/JRA25_OPT3/input/data.seaice
60    http://ecco2.org/manuscripts/2011/NguyenJGR2011.pdf
61    it uses Southern Ocean ice and ice shelf parameters from JSO24
62    /data14/scratch/hzhang/CP/JSO24/input
63    (bathymetry and initial conditions tbd),
64    and it uses pkg/bbl and frazil instead of down_slope
65    
66    July 27, 2010.  Cube88 on pleiades - same as cube84 but with:
67       1. JRA25 instead of cube84 blend forcing
68       2. useSALT_PLUME  = .TRUE., (off in Southern Ocean)
69       3. useDOWN_SLOPE  = .TRUE.,
70       4. split north/south data.sec17saice parameters from regional optimizations
71       5. initialize from T/S/U/V/ETAN and sea ice from cube78 Jan 1992 pickup
72       6. 3-day 3D diagnostics
73       7. SEAICE_no_slip = .TRUE. to keep code stable
74    
75    June 30, 2009.  Cube86 -same as cube85 but with:
76       1. updated Southern OCean Bathymetry
77       2. ice shelf cavities
78    
79    June 16, 2009. Cube85 -same as cube84 but with:
80       1. split north/south data.seaice parameters from regional optimizations
81       2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
82       3. initialize from T/S/U/V/ETAN and sea ice files
83       4. 3-day 3D diagnostics
84       5. SEAICE_no_slip=.TRUE. to keep code stable
85    
86    June 13, 2008. Cube 81 - same as cube79 but with
87       1. new values for data.seaice and data.exf
88       2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
89       3. GMRedi turned off
90    
91    December 22, 2007. Cube80 - same as cube79 but with
92       SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
93       ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
94       ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
95    December 2, 2007. Cube79 - same as cube78 (blend3) but with
96       useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
97    November 22, 2007. Cube 78 - blend 3
98  November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY  November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
99                              and era40_ecmwf_blend/cube59_GPCP forcing                              and era40_ecmwf_blend/cube59_GPCP forcing
100  November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration  November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration
# Line 24  April 24, 2007. Cube65: Bryan and Lewis Line 111  April 24, 2007. Cube65: Bryan and Lewis
111     (cube67, cube68, and cube69 were carried out with cube65 code)     (cube67, cube68, and cube69 were carried out with cube65 code)
112  April 7 , 2007. Cube64: era40_fullres forcing  April 7 , 2007. Cube64: era40_fullres forcing
113    
114    February 6, 2006: cube56, same as cube 50 with SEAICEuseFlooding
115    
116  ##########################################################################  February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.002)
117  # Get forcing files, etc.                    removed UVEL and VVEL from diagnostics
 # Example below is for cube77 on /nobackup2a/menemenl  
118    
119  cd /nobackup2a/menemenl  January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
 mkdir cube77  
 cd cube77  
 ln -sf ../run_template .  
 ln -sf ../cube59_GPCP .  
 ln -sf ../era40_ecmwf_blend .  
 ln -sf ../ncep_rgau .  
120    
121  ##########################################################################  January 5, 2006: cube50, like cube48 but with snow advection
 # getting the code from anonymous CVS server  
122    
123    bash or sh shell:  December 30, 2006: updates for cube49, the first
124      $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'  "blend" integration.
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
   tcsh or csh shell:  
     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
125    
126  cvs co MITgcm_contrib/high_res_cube/README.cs510  December 11, 2006: preparing for cube47, same as cube43
127  cvs co MITgcm_contrib/high_res_cube/code-mods  but with Arctic monthly river runoff climatology.
 cvs co MITgcm_contrib/high_res_cube/input  
 cvs co MITgcm_code  
128    
129    December 5, 2006: 216-CPU code for cube46
130    Changed diagnostics to accomodate JMCs latest and some
131    changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
132    to speed up code.
133    
134  ##########################################################################  November 7, 2006: 216-CPU code for cube43
135  # 510*510*6*50, 216-cpu cube sphere on altix with ifort  Bug fixes in growth.F routine and new set of diagnostics
136    
137  cd MITgcm  October 15, 2006: 216-CPU code for cube40
 mkdir build run  
 cd build  
 \rm *  
 \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .  
 \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  
 \cp SIZE.h_216 SIZE.h  
 ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas  
 make depend  
 make -j  
 cd ../run  
 \rm *  
 \cp ../../MITgcm_contrib/high_res_cube/input/* .  
 ln -sf ../../run_template/* .  
 \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC*JAN*  
 \mv data.exf_hr data.exf  
 \mv data_hr data  
 ln -sf ../../run_template/pickup.0000000216.cube75 pickup.0000000216  
 ln -sf ../../run_template/pickup_seaice.0000000216.cube76 pickup_seaice.0000000216  
 ln -sf ../../run_template/pickup.0000000216.meta .  
 ln -sf ../../run_template/pickup_seaice.0000000216.meta .  
 \cp ../build/mitgcmuv .  
 \mv job_altix cube77  
 qsub cube77  
138    
139    September 28, 2006: 216-CPU code for cube38
140    
141  ##########################################################################  September 4, 2006
142  # generating initial pickup files for cube74  Modified 32*32*6*15 experiments to use grid_cs32.* files from
143     verification/tutorial_held_suarez_cs/input instead of
144     tile* files from verification/global_ocean.cs32x15/input
145    
146  data.cal  August 8, 2006: 216-CPU code and input used for cube37
147  # start on December 30 because of bug that does  using "June 10, 2006" MITgcm code.
 # not allow a January 1, hour 0 start  
  startDate_1=19881230,  
   
 data  
 # run for 4 days with 2-min time step  
  niter0=0,  
  endtime=345600.,  
  deltaT=120.,  
  pChkptFreq=345600.,  
  monitorFreq=1.,  
   
 data.seaice  
 # set SEAICE_salinity to 33 to avoid initialization schock if  
 # ice is created or melts during first time step  
       HeffFile           = 'heff_file8',  
       SEAICE_salinity    = 33.,  
148    
149  \mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube74  for online T/S profile diagnostics all that is needed is
150  \mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube74    profiles_init_fixed
151      profiles_inloop
152    see pkg/ecco/ecco_cost_init_fixed.F
153        pkg/ecco/cost_averagesfields.F
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