/[MITgcm]/MITgcm_contrib/high_res_cube/README.cs510
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revision 1.25 by dimitri, Fri Aug 31 14:41:25 2007 UTC revision 1.52 by dimitri, Thu Dec 6 00:26:42 2012 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
 Forcing fields and other input files needed for the CS510  
 configuration can be obtained from  
 http://ecco2.org/products/model_setups/cs510.html  
   
 =================  
   
 UPDATES  
   
 August 31, 2007.  Cube75 - the second blend.  
 August 9, 2007. Cube74  
 August 6, 2007. Cube73  
 July 24, 2007. Cube72  
 July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT,  
    rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6  
    useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10  
    bathyFile=GEBCO_510x6x510_ver06_dig.bin, HeffFile=heff_file8  
    SEAICE_availHeatFrac=.5, useGMRedi=.TRUE.  
 April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity  
    (cube67, cube68, and cube69 were carried out with cube65 code)  
 April 7 , 2007. Cube64: era40_fullres forcing  
   
   
3  ##########################################################################  ##########################################################################
4  # Get forcing files, etc.  # Get forcing files, etc.
5  # Example below is for cube65 on /nobackup2a/menemenl  # Example below is for cube94 on pleiades
6    
7  cd /nobackup2a/menemenl  mkdir cube94
8  mkdir cube75  cd cube94
9  cd cube75  ln -sf /nobackupp10/hzhang1/cs510/run_template .
10  ln -sf ../run_template .  ln -sf /nobackupp10/hzhang1/forcing/jra25 .
11  ln -sf ../cube75_forcing .  ln -sf /nobackupp10/hzhang1/forcing/cube78_forcing .
12    
13    
14  ##########################################################################  ##########################################################################
15  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
16    
   bash or sh shell:  
     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
   tcsh or csh shell:  
     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
17  cvs co MITgcm_contrib/high_res_cube/README.cs510  cvs co MITgcm_contrib/high_res_cube/README.cs510
18  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
19  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
# Line 53  cvs co MITgcm_code Line 21  cvs co MITgcm_code
21    
22    
23  ##########################################################################  ##########################################################################
24  # 510*510*6*50, 216-cpu cube sphere on altix with ifort  # 510*510*6*50, 450-cpu cube sphere on pleiades with ifort
25    
26  cd MITgcm  cd MITgcm
27  mkdir build run  mkdir build run
28  cd build  cd build
29  \rm *  \rm *
30  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
31  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s450t_34x102/SIZE.h .
32  \cp SIZE.h_216 SIZE.h  \rm README SIZE.h_mpi
33  ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas
34  make depend  make depend
35  make -j  make -j 16
36  cd ../run  cd ../run
37  \rm *  \rm *
38  \cp ../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../MITgcm_contrib/high_res_cube/input/*data* .
39  ln -sf ../../run_template/* .  \cp ../../MITgcm_contrib/high_res_cube/input/modpickup .
40  \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC*JAN*  \cp ../../MITgcm_contrib/high_res_cube/input/job* .
41    \mv data.seaice_hr data.seaice
42  \mv data.exf_hr data.exf  \mv data.exf_hr data.exf
43  \mv data_hr data  \mv data_hr data
44  ln -sf ../../run_template/pickup.0000000216.cube75 pickup.0000000216  \ln -sf ../../run_template/tile* .
45  ln -sf ../../run_template/pickup_seaice.0000000216.cube75 pickup_seaice.0000000216  \ln -sf ../../run_template/G*dig* .
46    \ln -sf ../../run_template/*Init.cube78 .
47  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
48  \mv job_altix cube75  qsub job_cs510_pleiades450
49  qsub cube75  
50    =================
51    
52    UPDATES
53    
54  ##########################################################################  March 19, 2012. Cube94 on pleiades
55  # generating initial pickup files for cube74  This integration is driven by JRA25 (as was cube92)
56    but it includes shelfice (as did cube86),
57    it is based on MITgcm > checkpoint63k (that is post ICE workshop code),
58    it uses optimized Arctic sea ice parameters from
59    http://ecco2.jpl.nasa.gov/data1/arctic/output/newcode_050109/JRA25_OPT3/input/data.seaice
60    http://ecco2.org/manuscripts/2011/NguyenJGR2011.pdf
61    it uses Southern Ocean ice and ice shelf parameters from JSO24
62    /data14/scratch/hzhang/CP/JSO24/input
63    (bathymetry and initial conditions tbd),
64    and it uses pkg/bbl and frazil instead of down_slope
65    
66    July 27, 2010.  Cube88 on pleiades - same as cube84 but with:
67       1. JRA25 instead of cube84 blend forcing
68       2. useSALT_PLUME  = .TRUE., (off in Southern Ocean)
69       3. useDOWN_SLOPE  = .TRUE.,
70       4. split north/south data.sec17saice parameters from regional optimizations
71       5. initialize from T/S/U/V/ETAN and sea ice from cube78 Jan 1992 pickup
72       6. 3-day 3D diagnostics
73       7. SEAICE_no_slip = .TRUE. to keep code stable
74    
75    June 30, 2009.  Cube86 -same as cube85 but with:
76       1. updated Southern OCean Bathymetry
77       2. ice shelf cavities
78    
79    June 16, 2009. Cube85 -same as cube84 but with:
80       1. split north/south data.seaice parameters from regional optimizations
81       2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
82       3. initialize from T/S/U/V/ETAN and sea ice files
83       4. 3-day 3D diagnostics
84       5. SEAICE_no_slip=.TRUE. to keep code stable
85    
86    June 13, 2008. Cube 81 - same as cube79 but with
87       1. new values for data.seaice and data.exf
88       2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
89       3. GMRedi turned off
90    
91    December 22, 2007. Cube80 - same as cube79 but with
92       SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
93       ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
94       ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
95    December 2, 2007. Cube79 - same as cube78 (blend3) but with
96       useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
97    November 22, 2007. Cube 78 - blend 3
98    November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
99                                and era40_ecmwf_blend/cube59_GPCP forcing
100    November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration
101    August 31, 2007.  Cube75 - the second blend.
102    August 9, 2007. Cube74
103    August 6, 2007. Cube73
104    July 24, 2007. Cube72
105    July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT,
106       rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6
107       useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10
108       bathyFile=GEBCO_510x6x510_ver06_dig.bin, HeffFile=heff_file8
109       SEAICE_availHeatFrac=.5, useGMRedi=.TRUE.
110    April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity
111       (cube67, cube68, and cube69 were carried out with cube65 code)
112    April 7 , 2007. Cube64: era40_fullres forcing
113    
114    February 6, 2006: cube56, same as cube 50 with SEAICEuseFlooding
115    
116    February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.002)
117                      removed UVEL and VVEL from diagnostics
118    
119    January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
120    
121    January 5, 2006: cube50, like cube48 but with snow advection
122    
123    December 30, 2006: updates for cube49, the first
124    "blend" integration.
125    
126    December 11, 2006: preparing for cube47, same as cube43
127    but with Arctic monthly river runoff climatology.
128    
129    December 5, 2006: 216-CPU code for cube46
130    Changed diagnostics to accomodate JMCs latest and some
131    changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
132    to speed up code.
133    
134    November 7, 2006: 216-CPU code for cube43
135    Bug fixes in growth.F routine and new set of diagnostics
136    
137    October 15, 2006: 216-CPU code for cube40
138    
139    September 28, 2006: 216-CPU code for cube38
140    
141    September 4, 2006
142    Modified 32*32*6*15 experiments to use grid_cs32.* files from
143     verification/tutorial_held_suarez_cs/input instead of
144     tile* files from verification/global_ocean.cs32x15/input
145    
146  data.cal  August 8, 2006: 216-CPU code and input used for cube37
147  # start on December 30 because of bug that does  using "June 10, 2006" MITgcm code.
 # not allow a January 1, hour 0 start  
  startDate_1=19881230,  
   
 data  
 # run for 4 days with 2-min time step  
  niter0=0,  
  endtime=345600.,  
  deltaT=120.,  
  pChkptFreq=345600.,  
  monitorFreq=1.,  
   
 data.seaice  
 # set SEAICE_salinity to 33 to avoid initialization schock if  
 # ice is created or melts during first time step  
       HeffFile           = 'heff_file8',  
       SEAICE_salinity    = 33.,  
148    
149  \mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube74  for online T/S profile diagnostics all that is needed is
150  \mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube74    profiles_init_fixed
151      profiles_inloop
152    see pkg/ecco/ecco_cost_init_fixed.F
153        pkg/ecco/cost_averagesfields.F
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