/[MITgcm]/MITgcm_contrib/high_res_cube/README.cs510
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revision 1.20 by dimitri, Mon Aug 6 23:53:09 2007 UTC revision 1.46 by dimitri, Tue Jun 30 23:19:57 2009 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
 Forcing fields and other input files needed for the CS510  
 configuration can be obtained from  
 http://ecco2.org/products/model_setups/cs510.html  
   
3  =================  =================
4    
5  UPDATES  UPDATES
6    
7    June 30, 2009.  Cube86 -same as cube85 but with:
8       1. updated Southern OCean Bathymetry
9       2. ice shelf cavities
10    
11    June 16, 2009. Cube85 -same as cube84 but with:
12       1. split north/south data.seaice parameters from regional optimizations
13       2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
14       3. initialize from T/S/U/V/ETAN and sea ice files
15       4. 3-day 3D diagnostics
16       5. SEAICE_no_slip=.TRUE. to keep code stable
17    
18    June 13, 2008. Cube 81 - same as cube79 but with
19       1. new values for data.seaice and data.exf
20       2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
21       3. GMRedi turned off
22    
23    December 22, 2007. Cube80 - same as cube79 but with
24       SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
25       ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
26       ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
27    December 2, 2007. Cube79 - same as cube78 (blend3) but with
28       useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
29    November 22, 2007. Cube 78 - blend 3
30    November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
31                                and era40_ecmwf_blend/cube59_GPCP forcing
32    November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration
33    August 31, 2007.  Cube75 - the second blend.
34    August 9, 2007. Cube74
35  August 6, 2007. Cube73  August 6, 2007. Cube73
36  July 24, 2007. Cube72  July 24, 2007. Cube72
37  July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT,  July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT,
# Line 22  April 7 , 2007. Cube64: era40_fullres fo Line 46  April 7 , 2007. Cube64: era40_fullres fo
46    
47  ##########################################################################  ##########################################################################
48  # Get forcing files, etc.  # Get forcing files, etc.
49  # Example below is for cube65 on /nobackup2a/menemenl  # Example below is for cube86 on /nobackup2a/menemenl
50    
51  cd /nobackup2a/menemenl  cd /nobackup2a/menemenl/cs510
52  mkdir cube73  mkdir cube86
53  cd cube73  cd cube86
54  ln -sf ../run_template .  ln -sf ../run_template .
55  ln -sf ../ncep_rgau .  ln -sf ../../forcing/cube78_forcing .
 ln -sf ../era40_ecmwf_blend .  
 ln -sf ../cube59_GPCP .  
56    
57    
58  ##########################################################################  ##########################################################################
59  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
60    
   bash or sh shell:  
     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
   tcsh or csh shell:  
     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
61  cvs co MITgcm_contrib/high_res_cube/README.cs510  cvs co MITgcm_contrib/high_res_cube/README.cs510
62  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
63  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
# Line 60  mkdir build run Line 72  mkdir build run
72  cd build  cd build
73  \rm *  \rm *
74  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
75  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/SIZE.h_216 SIZE.h
76  \cp SIZE.h_216 SIZE.h  ../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas
 ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas  
77  make depend  make depend
78  make -j  make -j 8
79  cd ../run  cd ../run
80  \rm *  \rm *
81  \cp ../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../MITgcm_contrib/high_res_cube/input/* .
82  ln -sf ../../run_template/* .  \ln -sf ../../run_template/* .
83  \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W* h*[6-7] PHCT*  \rm *192_94* *.m heff_* pickup* A* D* E* G*all.bin GEBCO_5* L* PHC* W*
84    \mv data.seaice_hr data.seaice
85  \mv data.exf_hr data.exf  \mv data.exf_hr data.exf
86  \mv data_hr data  \mv data_hr data
 ln -sf ../../run_template/pickup.0000000216.cube71 pickup.0000000216  
 ln -sf ../../run_template/pickup_seaice.0000000216.cube66 pickup_seaice.0000000216  
87  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
88  \mv job_altix cube73  \mv job_altix cube86
89  qsub cube73  qsub cube86
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