/[MITgcm]/MITgcm_contrib/high_res_cube/README.cs510
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revision 1.13 by dimitri, Fri Jun 22 20:16:51 2007 UTC revision 1.40 by dimitri, Tue Jun 17 17:42:04 2008 UTC
# Line 8  http://ecco2.org/products/model_setups/c Line 8  http://ecco2.org/products/model_setups/c
8    
9  UPDATES  UPDATES
10    
11  June  22, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT,  June 13, 2008. Cube 81 - same as cube79 but with
12       1. salt plume package turned on
13       2. new values for data.seaice and data.exf
14       3. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
15       4. GMRedi turned off
16    
17    December 22, 2007. Cube80 - same as cube79 but with
18       SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
19       ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
20       ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
21    December 2, 2007. Cube79 - same as cube78 (blend3) but with
22       useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
23    November 22, 2007. Cube 78 - blend 3
24    November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
25                                and era40_ecmwf_blend/cube59_GPCP forcing
26    November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration
27    August 31, 2007.  Cube75 - the second blend.
28    August 9, 2007. Cube74
29    August 6, 2007. Cube73
30    July 24, 2007. Cube72
31    July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT,
32     rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6     rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6
33     useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10     useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10
34       bathyFile=GEBCO_510x6x510_ver06_dig.bin, HeffFile=heff_file8
35       SEAICE_availHeatFrac=.5, useGMRedi=.TRUE.
36  April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity  April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity
37     (cube67, cube68, and cube69 were carried out with cube65 code)     (cube67, cube68, and cube69 were carried out with cube65 code)
38  April 7 , 2007. Cube64: era40_fullres forcing  April 7 , 2007. Cube64: era40_fullres forcing
# Line 18  April 7 , 2007. Cube64: era40_fullres fo Line 40  April 7 , 2007. Cube64: era40_fullres fo
40    
41  ##########################################################################  ##########################################################################
42  # Get forcing files, etc.  # Get forcing files, etc.
43  # Example below is for cube65 on /nobackup2a/menemenl  # Example below is for cube81 on /nobackup2a/menemenl
44    
45  cd /nobackup2a/menemenl  cd /nobackup2a/menemenl
46  mkdir cube65  mkdir cube81
47  cd cube65  cd cube81
48  ln -sf ../run_template .  ln -sf ../run_template .
49  ln -sf ../ncep_rgau .  ln -sf ../cube78_forcing .
50  ln -sf ../era40_fullres .  ln -sf ../ncep_rgau/ .
51    
52    
53  ##########################################################################  ##########################################################################
# Line 48  cvs co MITgcm_code Line 70  cvs co MITgcm_code
70    
71    
72  ##########################################################################  ##########################################################################
73  # 510*510*6*50, 216-cpu cube sphere on altix with ifort  # 510*510*6*50, 450-cpu cube sphere on altix with ifort
74    
75  cd MITgcm  cd MITgcm
76  mkdir build run  mkdir build run
77  cd build  cd build
78  \rm *  \rm *
79  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
80  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s1800t_17x51/* .
81  \cp SIZE.h_216 SIZE.h  \mv SIZE.h_450 SIZE.h
 \cp packages.conf_hr packages.conf  
82  ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas  ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas
83  make depend  make depend
84  make -j  make -j
# Line 65  cd ../run Line 86  cd ../run
86  \rm *  \rm *
87  \cp ../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../MITgcm_contrib/high_res_cube/input/* .
88  ln -sf ../../run_template/* .  ln -sf ../../run_template/* .
89  \rm pickup* data.pkg data.seaice data.exf_clim data.exf data *192_94* *.m LEV*JAN*  \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC*
90  ln -sf ../../run_template/pickup.0000000216.cube49 pickup.0000000216  \mv data.exf_hr data.exf
91  ln -sf ../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216  \mv data_hr data
92    ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216
93    ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216
94    ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta
95    ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta
96  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
97  \mv job_altix cube65  \mv job_altix cube81
98  qsub cube65  qsub cube81
99    
100    
101    ##########################################################################
102    # generating initial pickup files for cube78
103    
104    data
105    # run for 4 days from time step 216 with 2-min time step
106     endtime=345600.,
107     deltaT=120.,
108     pChkptFreq=345600.,
109     monitorFreq=1.,
110    
111    cd ../../run_template
112    mv pickup.0000000216.cube78 pickup.0000000216.cube78_raw
113    mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216.cube78_raw
114    cd ../cube78/MITgcm/run
115    \mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube78
116    \mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube78
117    \mv pickup.0000002880.meta ../../run_template/pickup.0000000216.meta.cube78
118    \mv pickup_seaice.0000002880.meta ../../run_template/pickup_seaice.0000000216.meta.cube78
119    \rm *.meta *.data STD* cube78.o*
120    \cp ../../MITgcm_contrib/high_res_cube/input/data_hr data
121    ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216
122    ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216
123    ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta
124    ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta
125    qsub cube78
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