1 |
!!!! Instructions in this file are obsolete and will eventually |
2 |
!!!! be removed. This file has been replaced by |
3 |
!!!! MITgcm_contrib/high_res_cube/README.cs510 |
4 |
!!!! MITgcm_contrib/high_res_cube/README.cs32 |
5 |
|
6 |
================= |
7 |
|
8 |
Instructions for setting up a cube-sphere integration with sea-ice. |
9 |
|
10 |
Forcing fields and other input files needed for the CS510 |
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configuration can be obtained from |
12 |
http://ecco2.org/products/model_setups/cs510.html |
13 |
|
14 |
================= |
15 |
|
16 |
UPDATES |
17 |
|
18 |
February 6, 2006: cube56, same as cube 50 with SEAICEuseFlooding |
19 |
|
20 |
February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.002) |
21 |
removed UVEL and VVEL from diagnostics |
22 |
|
23 |
January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012 |
24 |
|
25 |
January 5, 2006: cube50, like cube48 but with snow advection |
26 |
|
27 |
December 30, 2006: updates for cube49, the first |
28 |
"blend" integration. |
29 |
|
30 |
December 11, 2006: preparing for cube47, same as cube43 |
31 |
but with Arctic monthly river runoff climatology. |
32 |
|
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December 5, 2006: 216-CPU code for cube46 |
34 |
Changed diagnostics to accomodate JMCs latest and some |
35 |
changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h |
36 |
to speed up code. |
37 |
|
38 |
November 7, 2006: 216-CPU code for cube43 |
39 |
Bug fixes in growth.F routine and new set of diagnostics |
40 |
|
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October 15, 2006: 216-CPU code for cube40 |
42 |
|
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September 28, 2006: 216-CPU code for cube38 |
44 |
|
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September 4, 2006 |
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Modified 32*32*6*15 experiments to use grid_cs32.* files from |
47 |
verification/tutorial_held_suarez_cs/input instead of |
48 |
tile* files from verification/global_ocean.cs32x15/input |
49 |
|
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August 8, 2006: 216-CPU code and input used for cube37 |
51 |
using "June 10, 2006" MITgcm code. |
52 |
|
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for online T/S profile diagnostics all that is needed is |
54 |
profiles_init_fixed |
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profiles_inloop |
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see pkg/ecco/ecco_cost_init_fixed.F |
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pkg/ecco/cost_averagesfields.F |
58 |
|
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########################################################################## |
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########################################################################## |
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# Get forcing files, etc. |
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# Example below is for cube46 on /nobackup2a/menemenl |
63 |
|
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cd /nobackup2a/menemenl |
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mkdir cube47 |
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cd cube47 |
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ln -sf ../run_template . |
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ln -sf ../ncep_rgau . |
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|
70 |
|
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########################################################################## |
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########################################################################## |
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# getting the code from anonymous CVS server |
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|
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bash or sh shell: |
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$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
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$ cvs login |
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( enter the CVS password: "cvsanon" ) |
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|
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tcsh or csh shell: |
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$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
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$ cvs login |
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( enter the CVS password: "cvsanon" ) |
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|
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cvs co MITgcm_contrib/high_res_cube/README_ice |
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cvs co MITgcm_contrib/high_res_cube/code-mods |
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cvs co MITgcm_contrib/high_res_cube/input |
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cvs co MITgcm_contrib/high_res_cube/results |
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cvs co MITgcm_code |
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cvs co MITgcm/verification/global_ocean.cs32x15 |
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cvs co MITgcm/verification/tutorial_held_suarez_cs/input |
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|
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|
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########################################################################## |
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########################################################################## |
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# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics |
97 |
|
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cd MITgcm/verification/global_ocean.cs32x15/code |
99 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
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\cp SIZE.h_216 SIZE.h |
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\cp packages.conf_hr packages.conf |
103 |
|
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cd ../build |
105 |
\rm * |
106 |
../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
109 |
|
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../input/* . |
115 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
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ln -sf ../../../../run_template/* . |
117 |
\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr* |
118 |
\rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t |
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ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216 |
120 |
ln -sf ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216 |
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\cp ../build/mitgcmuv . |
122 |
qsub job_altix |
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|
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|
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########################################################################## |
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########################################################################## |
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# 32*32*6*15, 1-cpu cube sphere |
128 |
|
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cd MITgcm/verification/global_ocean.cs32x15/code |
130 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
131 |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
132 |
\rm CPP_EEOPTIONS.h |
133 |
cd ../build |
134 |
\rm * |
135 |
../../../tools/genmake2 -mods=../code |
136 |
make depend |
137 |
make |
138 |
cd .. |
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mkdir run |
140 |
cd run |
141 |
\rm * |
142 |
\cp ../../tutorial_held_suarez_cs/input/grid* . |
143 |
\cp ../input/* . |
144 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
145 |
../build/mitgcmuv >& output.txt |
146 |
|
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comparison output is in: |
148 |
../../../../MITgcm_contrib/high_res_cube/results/output.txt |
149 |
|
150 |
to use matlab to look at the output |
151 |
matlab |
152 |
|
153 |
for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ... |
154 |
'surForcT','oceTAUX','oceTAUY','surForcS'} |
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tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]); |
156 |
cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
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end |
158 |
|
159 |
heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]); |
160 |
mask=0*heff; mask(find(heff>.001))=1; |
161 |
uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]); |
162 |
vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]); |
163 |
clf |
164 |
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3') |
165 |
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6') |
166 |
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3') |
167 |
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6') |
168 |
|
169 |
|
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########################################################################## |
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########################################################################## |
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# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment |
173 |
|
174 |
cd MITgcm/verification/global_ocean.cs32x15/code |
175 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
176 |
\cp ../code_alt/code.176t_8x4/* . |
177 |
cd ../build |
178 |
\rm * |
179 |
../../../tools/genmake2 -mods=../code |
180 |
make depend |
181 |
make |
182 |
cd .. |
183 |
mkdir run |
184 |
cd run |
185 |
\rm * |
186 |
\cp ../../tutorial_held_suarez_cs/input/grid* . |
187 |
\cp ../input/* . |
188 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
189 |
../build/mitgcmuv >& output.txt |
190 |
|
191 |
|
192 |
########################################################################## |
193 |
########################################################################## |
194 |
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort |
195 |
|
196 |
cd MITgcm/verification/global_ocean.cs32x15/code |
197 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
198 |
\cp ../../../utils/exch2/code-mods/s12t_16x32/* . |
199 |
\cp SIZE.h_mpi SIZE.h |
200 |
|
201 |
cd ../build |
202 |
\rm * |
203 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
204 |
make depend |
205 |
make -j |
206 |
|
207 |
cd .. |
208 |
mkdir run |
209 |
cd run |
210 |
\rm * |
211 |
\cp ../../tutorial_held_suarez_cs/input/grid* . |
212 |
\cp ../input/* . |
213 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
214 |
mpirun -np 2 ../build/mitgcmuv |
215 |
|
216 |
|
217 |
########################################################################## |
218 |
########################################################################## |
219 |
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc |
220 |
# starting with pickup file from end of 1992 |
221 |
# requires input files in sudirectories run_template and ncep_rgau |
222 |
|
223 |
cd MITgcm/verification/global_ocean.cs32x15/code |
224 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
225 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* . |
226 |
\cp packages.conf_hr packages.conf |
227 |
|
228 |
cd ../build |
229 |
\rm * |
230 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
231 |
make depend |
232 |
make -j |
233 |
|
234 |
cd .. |
235 |
mkdir run |
236 |
cd run |
237 |
\rm * |
238 |
\cp ../input/* . |
239 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
240 |
qsub job_altix92_54t |
241 |
|
242 |
|
243 |
########################################################################## |
244 |
########################################################################## |
245 |
# 510*510*6*50, 1500-tile, 150-cpu, excludes land |
246 |
# uses s1500t_17x51 configuration |
247 |
|
248 |
cd MITgcm/verification/global_ocean.cs32x15/code |
249 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
250 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
251 |
\cp SIZE.h_150 SIZE.h |
252 |
\cp packages.conf_hr packages.conf |
253 |
|
254 |
cd ../build |
255 |
\rm * |
256 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
257 |
make depend |
258 |
make -j |
259 |
|
260 |
cd .. |
261 |
mkdir run |
262 |
cd run |
263 |
\rm * |
264 |
\cp ../input/* . |
265 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
266 |
ln -sf ../../../../run_template/* . |
267 |
\rm pickup* |
268 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
269 |
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
270 |
\cp ../build/mitgcmuv mitgcmuv150 |
271 |
qsub job_altix150 |
272 |
|
273 |
|
274 |
########################################################################## |
275 |
########################################################################## |
276 |
# 510*510*6*50, 1500-tile, 375-cpu, excludes land |
277 |
# uses s1500t_17x51 configuration |
278 |
# example for running on c17-c20 using arrayd |
279 |
|
280 |
cd MITgcm/verification/global_ocean.cs32x15/code |
281 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
282 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
283 |
\cp SIZE.h_375 SIZE.h |
284 |
\cp packages.conf_hr packages.conf |
285 |
|
286 |
cd ../build |
287 |
\rm * |
288 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
289 |
make depend |
290 |
make -j |
291 |
|
292 |
cd .. |
293 |
mkdir run |
294 |
cd run |
295 |
\rm * |
296 |
\cp ../input/* . |
297 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
298 |
ln -sf ../../../../run_template/* . |
299 |
\rm pickup* |
300 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
301 |
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
302 |
\cp ../build/mitgcmuv . |
303 |
job_c20_375cpu < /dev/null >&! output.run & |
304 |
|
305 |
|
306 |
########################################################################## |
307 |
########################################################################## |
308 |
# 510*510*6*50, 1500-tile, 375-cpu, excludes land |
309 |
# uses s1500t_17x51 configuration |
310 |
# example for running on c17-c20 using arrayd |
311 |
|
312 |
cd MITgcm/verification/global_ocean.cs32x15/code |
313 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
314 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
315 |
\cp SIZE.h_375 SIZE.h |
316 |
\cp packages.conf_hr packages.conf |
317 |
|
318 |
cd ../build |
319 |
\rm * |
320 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
321 |
make depend |
322 |
make -j |
323 |
|
324 |
cd .. |
325 |
mkdir run |
326 |
cd run |
327 |
\rm * |
328 |
\cp ../input/* . |
329 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
330 |
ln -sf ../../../../run_template/* . |
331 |
\rm pickup* |
332 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
333 |
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
334 |
\cp ../build/mitgcmuv . |
335 |
job_c20_375cpu < /dev/null >&! output.run & |
336 |
|
337 |
|
338 |
########################################################################## |
339 |
########################################################################## |
340 |
# 510*510*6*50, 1500-tile, 500-cpu, excludes land |
341 |
# uses s1500t_17x51 configuration |
342 |
# example for running on c17-c20 using arrayd |
343 |
|
344 |
cd MITgcm/verification/global_ocean.cs32x15/code |
345 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
346 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
347 |
\cp SIZE.h_500 SIZE.h |
348 |
\cp packages.conf_hr packages.conf |
349 |
|
350 |
cd ../build |
351 |
\rm * |
352 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
353 |
make depend |
354 |
make -j |
355 |
|
356 |
cd .. |
357 |
mkdir run |
358 |
cd run |
359 |
\rm * |
360 |
\cp ../input/* . |
361 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
362 |
ln -sf ../../../../run_template/* . |
363 |
\rm pickup* |
364 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
365 |
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
366 |
\cp ../build/mitgcmuv . |
367 |
job_c19_500cpu < /dev/null >&! output.run & |
368 |
|
369 |
|
370 |
########################################################################## |
371 |
########################################################################## |
372 |
# 510*510*6*50, 216-cpu cube sphere on cosmos |
373 |
|
374 |
cd MITgcm/verification/global_ocean.cs32x15/code |
375 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
376 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
377 |
\cp SIZE.h_216 SIZE.h |
378 |
\cp packages.conf_hr packages.conf |
379 |
|
380 |
module unload latest_intel80 |
381 |
module unload mpich-gm-intel80 |
382 |
module load latest_intel81 |
383 |
module load mpich-gm-intel81 |
384 |
|
385 |
cd ../build |
386 |
\rm * |
387 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos |
388 |
make depend |
389 |
make -j |
390 |
|
391 |
cd .. |
392 |
mkdir run |
393 |
cd run |
394 |
\rm * |
395 |
\cp ../input/* . |
396 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
397 |
ln -sf ../../../../run_template/* . |
398 |
\rm pickup* |
399 |
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216 |
400 |
ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216 |
401 |
\cp ../build/mitgcmuv . |
402 |
bsub < job_cosmos |
403 |
|
404 |
|
405 |
########################################################################## |
406 |
########################################################################## |
407 |
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc |
408 |
# requires input files in sudirectories run_template and ncep_rgau |
409 |
# presently residing under orion:/tmp1/dmenem/cube |
410 |
|
411 |
cd MITgcm/verification/global_ocean.cs32x15/code |
412 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
413 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
414 |
\cp SIZE.h_54 SIZE.h |
415 |
\cp packages.conf_hr packages.conf |
416 |
|
417 |
cd ../build |
418 |
\rm * |
419 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
420 |
make depend |
421 |
make -j |
422 |
|
423 |
cd .. |
424 |
mkdir run |
425 |
cd run |
426 |
\rm * |
427 |
\cp ../input/* . |
428 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
429 |
qsub job_orion |
430 |
|
431 |
|
432 |
########################################################################## |
433 |
########################################################################## |
434 |
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc |
435 |
# requires input files in sudirectories run_template and ncep_rgau |
436 |
# presently residing under orion:/tmp1/dmenem/cube |
437 |
|
438 |
cd MITgcm/verification/global_ocean.cs32x15/code |
439 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
440 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* . |
441 |
\cp SIZE.h_41 SIZE.h |
442 |
\cp packages.conf_hr packages.conf |
443 |
|
444 |
cd ../build |
445 |
\rm * |
446 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
447 |
make depend |
448 |
make -j |
449 |
|
450 |
cd .. |
451 |
mkdir run |
452 |
cd run |
453 |
\rm * |
454 |
\cp ../input/* . |
455 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
456 |
qsub job_orion41 |
457 |
|
458 |
|
459 |
########################################################################## |
460 |
########################################################################## |
461 |
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc |
462 |
# requires input files in sudirectories run_template and ncep_rgau |
463 |
# presently residing under orion:/tmp1/dmenem/cube |
464 |
|
465 |
cd MITgcm/verification/global_ocean.cs32x15/code |
466 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* . |
467 |
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* . |
468 |
\cp SIZE.h_50 SIZE.h |
469 |
\cp packages.conf_hr packages.conf |
470 |
|
471 |
cd ../build |
472 |
\rm * |
473 |
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix |
474 |
make depend |
475 |
make -j |
476 |
|
477 |
cd .. |
478 |
mkdir run |
479 |
cd run |
480 |
\rm * |
481 |
\cp ../input/* . |
482 |
\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
483 |
qsub job_orion |