| 1 |
Instructions for setting up a cube-sphere integration with sea-ice. |
| 2 |
|
| 3 |
Forcing fields and other input files needed for the CS510 |
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configuration can be obtained from |
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http://ecco2.org/products/model_setups/cs510.html |
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|
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================= |
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|
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UPDATES |
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|
| 11 |
November 22, 2007. Cube 78 - blend 3 |
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November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY |
| 13 |
and era40_ecmwf_blend/cube59_GPCP forcing |
| 14 |
November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration |
| 15 |
August 31, 2007. Cube75 - the second blend. |
| 16 |
August 9, 2007. Cube74 |
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August 6, 2007. Cube73 |
| 18 |
July 24, 2007. Cube72 |
| 19 |
July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT, |
| 20 |
rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6 |
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useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10 |
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bathyFile=GEBCO_510x6x510_ver06_dig.bin, HeffFile=heff_file8 |
| 23 |
SEAICE_availHeatFrac=.5, useGMRedi=.TRUE. |
| 24 |
April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity |
| 25 |
(cube67, cube68, and cube69 were carried out with cube65 code) |
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April 7 , 2007. Cube64: era40_fullres forcing |
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|
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|
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########################################################################## |
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# Get forcing files, etc. |
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# Example below is for cube78 on /nobackup2a/menemenl |
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|
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cd /nobackup2a/menemenl |
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mkdir cube78 |
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cd cube78 |
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ln -sf ../run_template . |
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ln -sf ../cube78_forcing . |
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ln -sf ../ncep_rgau/ . |
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|
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|
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########################################################################## |
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# getting the code from anonymous CVS server |
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|
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bash or sh shell: |
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$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
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$ cvs login |
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( enter the CVS password: "cvsanon" ) |
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|
| 49 |
tcsh or csh shell: |
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$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
| 51 |
$ cvs login |
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( enter the CVS password: "cvsanon" ) |
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|
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cvs co MITgcm_contrib/high_res_cube/README.cs510 |
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cvs co MITgcm_contrib/high_res_cube/code-mods |
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cvs co MITgcm_contrib/high_res_cube/input |
| 57 |
cvs co MITgcm_code |
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|
| 59 |
|
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########################################################################## |
| 61 |
# 510*510*6*50, 216-cpu cube sphere on altix with ifort |
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|
| 63 |
cd MITgcm |
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mkdir build run |
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cd build |
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\rm * |
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\cp ../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . |
| 69 |
\cp SIZE.h_216 SIZE.h |
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../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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cd ../run |
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\rm * |
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\cp ../../MITgcm_contrib/high_res_cube/input/* . |
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ln -sf ../../run_template/* . |
| 77 |
\rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC* |
| 78 |
\mv data.exf_hr data.exf |
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\mv data_hr data |
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ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216 |
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ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 |
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ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta |
| 83 |
ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta |
| 84 |
\cp ../build/mitgcmuv . |
| 85 |
\mv job_altix cube78 |
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qsub cube78 |
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|
| 88 |
|
| 89 |
########################################################################## |
| 90 |
# generating initial pickup files for cube78 |
| 91 |
|
| 92 |
data |
| 93 |
# run for 4 days from time step 216 with 2-min time step |
| 94 |
endtime=345600., |
| 95 |
deltaT=120., |
| 96 |
pChkptFreq=345600., |
| 97 |
monitorFreq=1., |
| 98 |
|
| 99 |
cd ../../run_template |
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mv pickup.0000000216.cube78 pickup.0000000216.cube78_raw |
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mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216.cube78_raw |
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cd ../cube78/MITgcm/run |
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\mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube78 |
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\mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube78 |
| 105 |
\mv pickup.0000002880.meta ../../run_template/pickup.0000000216.meta.cube78 |
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\mv pickup_seaice.0000002880.meta ../../run_template/pickup_seaice.0000000216.meta.cube78 |
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\rm *.meta *.data STD* cube78.o* |
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\cp ../../MITgcm_contrib/high_res_cube/input/data_hr data |
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ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216 |
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ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 |
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ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta |
| 112 |
ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta |
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qsub cube78 |
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