/[MITgcm]/MITgcm_contrib/high_res_cube/README.cs510
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revision 1.19 by dimitri, Wed Jul 25 02:11:37 2007 UTC revision 1.51 by dimitri, Mon Mar 19 20:31:59 2012 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
 Forcing fields and other input files needed for the CS510  
 configuration can be obtained from  
 http://ecco2.org/products/model_setups/cs510.html  
   
 =================  
   
 UPDATES  
   
 July 24, 2007. Cube72  
 July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT,  
    rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6  
    useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10  
    bathyFile=GEBCO_510x6x510_ver06_dig.bin, HeffFile=heff_file8  
    SEAICE_availHeatFrac=.5, useGMRedi=.TRUE.  
 April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity  
    (cube67, cube68, and cube69 were carried out with cube65 code)  
 April 7 , 2007. Cube64: era40_fullres forcing  
   
   
3  ##########################################################################  ##########################################################################
4  # Get forcing files, etc.  # Get forcing files, etc.
5  # Example below is for cube65 on /nobackup2a/menemenl  # Example below is for cube88 on pleiades
6    
7  cd /nobackup2a/menemenl  mkdir cube94
8  mkdir cube72  cd cube94
9  cd cube72  ln -sf /nobackupp10/hzhang1/cs510/run_template .
10  ln -sf ../run_template .  ln -sf /nobackupp10/hzhang1/forcing/jra25 .
11  ln -sf ../ncep_rgau .  ln -sf /nobackupp10/hzhang1/forcing/cube78_forcing .
 ln -sf ../era40_ecmwf_blend .  
 ln -sf ../cube59_GPCP .  
12    
13    
14  ##########################################################################  ##########################################################################
15  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
16    
   bash or sh shell:  
     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
   tcsh or csh shell:  
     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
17  cvs co MITgcm_contrib/high_res_cube/README.cs510  cvs co MITgcm_contrib/high_res_cube/README.cs510
18  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
19  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
# Line 52  cvs co MITgcm_code Line 21  cvs co MITgcm_code
21    
22    
23  ##########################################################################  ##########################################################################
24  # 510*510*6*50, 216-cpu cube sphere on altix with ifort  # 510*510*6*50, 450-cpu cube sphere on pleiades with ifort
25    
26  cd MITgcm  cd MITgcm
27  mkdir build run  mkdir build run
28  cd build  cd build
29  \rm *  \rm *
30  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
31  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s450t_34x102/SIZE.h .
32  \cp SIZE.h_216 SIZE.h  \rm README SIZE.h_mpi
33  ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas
34  make depend  make depend
35  make -j  make -j 16
36  cd ../run  cd ../run
37  \rm *  \rm *
38  \cp ../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../MITgcm_contrib/high_res_cube/input/*data* .
39  ln -sf ../../run_template/* .  \cp ../../MITgcm_contrib/high_res_cube/input/modpickup .
40  \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W* h*[6-7] PHCT*  \cp ../../MITgcm_contrib/high_res_cube/input/job* .
41    \mv data.seaice_hr data.seaice
42  \mv data.exf_hr data.exf  \mv data.exf_hr data.exf
43  \mv data_hr data  \mv data_hr data
44  ln -sf ../../run_template/pickup.0000000216.cube71 pickup.0000000216  \ln -sf ../../run_template/tile* .
45  ln -sf ../../run_template/pickup_seaice.0000000216.cube66 pickup_seaice.0000000216  \ln -sf ../../run_template/G*dig* .
46    \ln -sf ../../run_template/*Init.cube78 .
47  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
48  \mv job_altix cube72  qsub job_cs510_pleiades450
49  qsub cube72  
50    =================
51    
52    UPDATES
53    
54    March 19, 2012. Cube94 on pleiades
55    This integration is driven by JRA25 (as was cube92)
56    but it includes shelfice (as did cube86),
57    it is based on MITgcm > checkpoint63k (that is post ICE workshop code),
58    it uses optimized Arctic sea ice parameters from
59    http://ecco2.jpl.nasa.gov/data1/arctic/output/newcode_050109/JRA25_OPT3/input/data.seaice
60    http://ecco2.org/manuscripts/2011/NguyenJGR2011.pdf
61    it uses Southern Ocean ice and ice shelf parameters from JSO24
62    /data14/scratch/hzhang/CP/JSO24/input
63    (bathymetry and initial conditions tbd),
64    and it uses pkg/bbl and frazil instead of down_slope
65    
66    July 27, 2010.  Cube88 on pleiades - same as cube84 but with:
67       1. JRA25 instead of cube84 blend forcing
68       2. useSALT_PLUME  = .TRUE., (off in Southern Ocean)
69       3. useDOWN_SLOPE  = .TRUE.,
70       4. split north/south data.sec17saice parameters from regional optimizations
71       5. initialize from T/S/U/V/ETAN and sea ice from cube78 Jan 1992 pickup
72       6. 3-day 3D diagnostics
73       7. SEAICE_no_slip = .TRUE. to keep code stable
74    
75    June 30, 2009.  Cube86 -same as cube85 but with:
76       1. updated Southern OCean Bathymetry
77       2. ice shelf cavities
78    
79    June 16, 2009. Cube85 -same as cube84 but with:
80       1. split north/south data.seaice parameters from regional optimizations
81       2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
82       3. initialize from T/S/U/V/ETAN and sea ice files
83       4. 3-day 3D diagnostics
84       5. SEAICE_no_slip=.TRUE. to keep code stable
85    
86    June 13, 2008. Cube 81 - same as cube79 but with
87       1. new values for data.seaice and data.exf
88       2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
89       3. GMRedi turned off
90    
91    December 22, 2007. Cube80 - same as cube79 but with
92       SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
93       ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
94       ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
95    December 2, 2007. Cube79 - same as cube78 (blend3) but with
96       useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
97    November 22, 2007. Cube 78 - blend 3
98    November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
99                                and era40_ecmwf_blend/cube59_GPCP forcing
100    November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration
101    August 31, 2007.  Cube75 - the second blend.
102    August 9, 2007. Cube74
103    August 6, 2007. Cube73
104    July 24, 2007. Cube72
105    July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT,
106       rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6
107       useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10
108       bathyFile=GEBCO_510x6x510_ver06_dig.bin, HeffFile=heff_file8
109       SEAICE_availHeatFrac=.5, useGMRedi=.TRUE.
110    April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity
111       (cube67, cube68, and cube69 were carried out with cube65 code)
112    April 7 , 2007. Cube64: era40_fullres forcing
113    
114    February 6, 2006: cube56, same as cube 50 with SEAICEuseFlooding
115    
116    February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.002)
117                      removed UVEL and VVEL from diagnostics
118    
119    January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
120    
121    January 5, 2006: cube50, like cube48 but with snow advection
122    
123    December 30, 2006: updates for cube49, the first
124    "blend" integration.
125    
126    December 11, 2006: preparing for cube47, same as cube43
127    but with Arctic monthly river runoff climatology.
128    
129    December 5, 2006: 216-CPU code for cube46
130    Changed diagnostics to accomodate JMCs latest and some
131    changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
132    to speed up code.
133    
134    November 7, 2006: 216-CPU code for cube43
135    Bug fixes in growth.F routine and new set of diagnostics
136    
137    October 15, 2006: 216-CPU code for cube40
138    
139    September 28, 2006: 216-CPU code for cube38
140    
141    September 4, 2006
142    Modified 32*32*6*15 experiments to use grid_cs32.* files from
143     verification/tutorial_held_suarez_cs/input instead of
144     tile* files from verification/global_ocean.cs32x15/input
145    
146    August 8, 2006: 216-CPU code and input used for cube37
147    using "June 10, 2006" MITgcm code.
148    
149    for online T/S profile diagnostics all that is needed is
150      profiles_init_fixed
151      profiles_inloop
152    see pkg/ecco/ecco_cost_init_fixed.F
153        pkg/ecco/cost_averagesfields.F
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