/[MITgcm]/MITgcm_contrib/high_res_cube/README.cs510
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revision 1.2 by dimitri, Sat Apr 7 23:57:59 2007 UTC revision 1.48 by dimitri, Fri May 7 23:11:28 2010 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
 Forcing fields and other input files needed for the CS510  
 configuration can be obtained from  
 http://ecco2.org/products/model_setups/cs510.html  
   
3  =================  =================
4    
5  UPDATES  UPDATES
6    
7  April 7, 2007: preparing for cube64  June 30, 2009.  Cube86 -same as cube85 but with:
8       1. updated Southern OCean Bathymetry
9       2. ice shelf cavities
10    
11    June 16, 2009. Cube85 -same as cube84 but with:
12       1. split north/south data.seaice parameters from regional optimizations
13       2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
14       3. initialize from T/S/U/V/ETAN and sea ice files
15       4. 3-day 3D diagnostics
16       5. SEAICE_no_slip=.TRUE. to keep code stable
17    
18    June 13, 2008. Cube 81 - same as cube79 but with
19       1. new values for data.seaice and data.exf
20       2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
21       3. GMRedi turned off
22    
23    December 22, 2007. Cube80 - same as cube79 but with
24       SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
25       ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
26       ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
27    December 2, 2007. Cube79 - same as cube78 (blend3) but with
28       useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
29    November 22, 2007. Cube 78 - blend 3
30    November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
31                                and era40_ecmwf_blend/cube59_GPCP forcing
32    November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration
33    August 31, 2007.  Cube75 - the second blend.
34    August 9, 2007. Cube74
35    August 6, 2007. Cube73
36    July 24, 2007. Cube72
37    July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT,
38       rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6
39       useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10
40       bathyFile=GEBCO_510x6x510_ver06_dig.bin, HeffFile=heff_file8
41       SEAICE_availHeatFrac=.5, useGMRedi=.TRUE.
42    April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity
43       (cube67, cube68, and cube69 were carried out with cube65 code)
44    April 7 , 2007. Cube64: era40_fullres forcing
45    
46    
47  ##########################################################################  ##########################################################################
48  # Get forcing files, etc.  # Get forcing files, etc.
49  # Example below is for cube46 on /nobackup2a/menemenl  # Example below is for cube86 on /nobackup/dmenemen
50    
51  cd /nobackup2a/menemenl  cd /nobackup/dmenemen/cs510
52  mkdir cube64  mkdir cube86
53  cd cube64  cd cube86
54  ln -sf ../run_template .  ln -sf ../run_template .
55  ln -sf ../ncep_rgau .  ln -sf ../../forcing/cube78_forcing .
 ln -sf ../era40_fullres .  
56    
57    
58  ##########################################################################  ##########################################################################
59  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
60    
   bash or sh shell:  
     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
   tcsh or csh shell:  
     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'  
     $ cvs login  
       ( enter the CVS password: "cvsanon" )  
   
61  cvs co MITgcm_contrib/high_res_cube/README.cs510  cvs co MITgcm_contrib/high_res_cube/README.cs510
62  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
63  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
 cvs co MITgcm_contrib/high_res_cube/results  
64  cvs co MITgcm_code  cvs co MITgcm_code
65    
66    
67  ##########################################################################  ##########################################################################
68  # 510*510*6*50, 216-cpu cube sphere on altix with ifort  # 510*510*6*50, 216-cpu cube sphere on pleiades with ifort
   
69    
70  cd MITgcm  cd MITgcm
71  mkdir build run  mkdir build run
72  cd build  cd build
73  \rm *  \rm *
74  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
75  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/SIZE.h_216 SIZE.h
76  \cp SIZE.h_216 SIZE.h  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas
 \cp packages.conf_hr packages.conf  
 ../tools/genmake2 -mods=../code -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas  
77  make depend  make depend
78  make -j  make -j 8
79  cd ../run  cd ../run
80  \rm *  \rm *
81  \cp ../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../MITgcm_contrib/high_res_cube/input/* .
82  ln -sf ../../run_template/* .  \ln -sf ../../run_template/* .
83  \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*  \rm *192_94* *.m heff_* pickup* A* D* E*
84  \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t  \rm G*all.bin G*dig.bin L* PHC* W*
85  ln -sf ../../run_template/pickup.0000000216.cube49 pickup.0000000216  \rm saltInit.cube78 thetaInit.cube78
86  ln -sf ../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216  \mv data.seaice_hr data.seaice
87    \mv data.exf_hr data.exf
88    \mv data_hr data
89  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
90  qsub job_altix  \mv job_altix cube86
91    qsub cube86
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