| 8 | 
  | 
  | 
| 9 | 
 UPDATES | 
 UPDATES | 
| 10 | 
  | 
  | 
| 11 | 
 April 14, 2007: preparing for cube65, Bryan and Lewis 1979 diffusivity | 
 December 2, 2007. Cube79 - same as cube78 (blend3) but with: | 
| 12 | 
 April 7 , 2007: preparing for cube64, era40_fullres forcing | 
                            i) EXF_SUBTRACT_UVVEL_FROM_UVWIND | 
| 13 | 
  | 
                            ii) global-mean rain adjustment | 
| 14 | 
  | 
                            iii) _eta_mean = 0 initial conditions | 
| 15 | 
  | 
 November 22, 2007. Cube 78 - blend 3 | 
| 16 | 
  | 
 November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY | 
| 17 | 
  | 
                             and era40_ecmwf_blend/cube59_GPCP forcing | 
| 18 | 
  | 
 November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration | 
| 19 | 
  | 
 August 31, 2007.  Cube75 - the second blend. | 
| 20 | 
  | 
 August 9, 2007. Cube74 | 
| 21 | 
  | 
 August 6, 2007. Cube73 | 
| 22 | 
  | 
 July 24, 2007. Cube72 | 
| 23 | 
  | 
 July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT, | 
| 24 | 
  | 
    rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6 | 
| 25 | 
  | 
    useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10 | 
| 26 | 
  | 
    bathyFile=GEBCO_510x6x510_ver06_dig.bin, HeffFile=heff_file8 | 
| 27 | 
  | 
    SEAICE_availHeatFrac=.5, useGMRedi=.TRUE. | 
| 28 | 
  | 
 April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity | 
| 29 | 
  | 
    (cube67, cube68, and cube69 were carried out with cube65 code) | 
| 30 | 
  | 
 April 7 , 2007. Cube64: era40_fullres forcing | 
| 31 | 
  | 
  | 
| 32 | 
  | 
  | 
| 33 | 
 ########################################################################## | 
 ########################################################################## | 
| 34 | 
 # Get forcing files, etc. | 
 # Get forcing files, etc. | 
| 35 | 
 # Example below is for cube46 on /nobackup2a/menemenl | 
 # Example below is for cube78 on /nobackup2a/menemenl | 
| 36 | 
  | 
  | 
| 37 | 
 cd /nobackup2a/menemenl | 
 cd /nobackup2a/menemenl | 
| 38 | 
 mkdir cube65 | 
 mkdir cube78 | 
| 39 | 
 cd cube65 | 
 cd cube78 | 
| 40 | 
 ln -sf ../run_template . | 
 ln -sf ../run_template . | 
| 41 | 
 ln -sf ../ncep_rgau . | 
 ln -sf ../cube78_forcing . | 
| 42 | 
 ln -sf ../era40_fullres . | 
 ln -sf ../ncep_rgau/ . | 
| 43 | 
  | 
  | 
| 44 | 
  | 
  | 
| 45 | 
 ########################################################################## | 
 ########################################################################## | 
| 71 | 
 \cp ../../MITgcm_contrib/high_res_cube/code-mods/* . | 
 \cp ../../MITgcm_contrib/high_res_cube/code-mods/* . | 
| 72 | 
 \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . | 
 \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . | 
| 73 | 
 \cp SIZE.h_216 SIZE.h | 
 \cp SIZE.h_216 SIZE.h | 
 | 
 \cp packages.conf_hr packages.conf | 
  | 
| 74 | 
 ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas | 
 ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas | 
| 75 | 
 make depend | 
 make depend | 
| 76 | 
 make -j | 
 make -j | 
| 78 | 
 \rm * | 
 \rm * | 
| 79 | 
 \cp ../../MITgcm_contrib/high_res_cube/input/* . | 
 \cp ../../MITgcm_contrib/high_res_cube/input/* . | 
| 80 | 
 ln -sf ../../run_template/* . | 
 ln -sf ../../run_template/* . | 
| 81 | 
 \rm pickup* data.pkg data.seaice data.exf_clim data.exf data *192_94* *.m LEV*JAN* | 
 \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC* | 
| 82 | 
 ln -sf ../../run_template/pickup.0000000216.cube49 pickup.0000000216 | 
 \mv data.exf_hr data.exf | 
| 83 | 
 ln -sf ../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216 | 
 \mv data_hr data | 
| 84 | 
  | 
 ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216 | 
| 85 | 
  | 
 ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 | 
| 86 | 
  | 
 ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta | 
| 87 | 
  | 
 ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta | 
| 88 | 
 \cp ../build/mitgcmuv . | 
 \cp ../build/mitgcmuv . | 
| 89 | 
 qsub job_altix | 
 \mv job_altix cube78 | 
| 90 | 
  | 
 qsub cube78 | 
| 91 | 
  | 
  | 
| 92 | 
  | 
  | 
| 93 | 
  | 
 ########################################################################## | 
| 94 | 
  | 
 # generating initial pickup files for cube78 | 
| 95 | 
  | 
  | 
| 96 | 
  | 
 data | 
| 97 | 
  | 
 # run for 4 days from time step 216 with 2-min time step | 
| 98 | 
  | 
  endtime=345600., | 
| 99 | 
  | 
  deltaT=120., | 
| 100 | 
  | 
  pChkptFreq=345600., | 
| 101 | 
  | 
  monitorFreq=1., | 
| 102 | 
  | 
  | 
| 103 | 
  | 
 cd ../../run_template | 
| 104 | 
  | 
 mv pickup.0000000216.cube78 pickup.0000000216.cube78_raw | 
| 105 | 
  | 
 mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216.cube78_raw | 
| 106 | 
  | 
 cd ../cube78/MITgcm/run | 
| 107 | 
  | 
 \mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube78 | 
| 108 | 
  | 
 \mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube78 | 
| 109 | 
  | 
 \mv pickup.0000002880.meta ../../run_template/pickup.0000000216.meta.cube78 | 
| 110 | 
  | 
 \mv pickup_seaice.0000002880.meta ../../run_template/pickup_seaice.0000000216.meta.cube78 | 
| 111 | 
  | 
 \rm *.meta *.data STD* cube78.o* | 
| 112 | 
  | 
 \cp ../../MITgcm_contrib/high_res_cube/input/data_hr data | 
| 113 | 
  | 
 ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216 | 
| 114 | 
  | 
 ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 | 
| 115 | 
  | 
 ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta | 
| 116 | 
  | 
 ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta | 
| 117 | 
  | 
 qsub cube78 |