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 Instructions for setting up a cube-sphere integration with sea-ice. | 
 Instructions for setting up a cube-sphere integration with sea-ice. | 
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 Forcing fields and other input files needed for the CS510 | 
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 configuration can be obtained from | 
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 http://ecco2.org/products/model_setups/cs510.html | 
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 ================= | 
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 UPDATES | 
 UPDATES | 
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 June 30, 2009.  Cube86 -same as cube85 but with: | 
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    1. updated Southern OCean Bathymetry | 
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    2. ice shelf cavities | 
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 June 16, 2009. Cube85 -same as cube84 but with: | 
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    1. split north/south data.seaice parameters from regional optimizations | 
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    2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally | 
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    3. initialize from T/S/U/V/ETAN and sea ice files | 
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    4. 3-day 3D diagnostics | 
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    5. SEAICE_no_slip=.TRUE. to keep code stable | 
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 June 13, 2008. Cube 81 - same as cube79 but with | 
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    1. new values for data.seaice and data.exf | 
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    2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic | 
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    3. GMRedi turned off | 
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 December 22, 2007. Cube80 - same as cube79 but with | 
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    SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea) | 
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    ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis | 
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    ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis | 
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 December 2, 2007. Cube79 - same as cube78 (blend3) but with | 
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    useRelativeWind=.TRUE. and SEAICE_gamma_t=259200 | 
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 November 22, 2007. Cube 78 - blend 3 | 
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 November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY | 
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                             and era40_ecmwf_blend/cube59_GPCP forcing | 
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 November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration | 
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 August 31, 2007.  Cube75 - the second blend. | 
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 August 9, 2007. Cube74 | 
 August 9, 2007. Cube74 | 
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 August 6, 2007. Cube73 | 
 August 6, 2007. Cube73 | 
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 July 24, 2007. Cube72 | 
 July 24, 2007. Cube72 | 
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 ########################################################################## | 
 ########################################################################## | 
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 # Get forcing files, etc. | 
 # Get forcing files, etc. | 
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 # Example below is for cube65 on /nobackup2a/menemenl | 
 # Example below is for cube86 on /nobackup2a/menemenl | 
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| 51 | 
 cd /nobackup2a/menemenl | 
 cd /nobackup2a/menemenl/cs510 | 
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 mkdir cube74 | 
 mkdir cube86 | 
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 cd cube74 | 
 cd cube86 | 
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 ln -sf ../run_template . | 
 ln -sf ../run_template . | 
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 ln -sf ../ncep_rgau . | 
 ln -sf ../../forcing/cube78_forcing . | 
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 ln -sf ../era40_ecmwf_blend . | 
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 ln -sf ../cube59_GPCP . | 
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 ########################################################################## | 
 ########################################################################## | 
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 # getting the code from anonymous CVS server | 
 # getting the code from anonymous CVS server | 
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   bash or sh shell: | 
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     $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack' | 
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     $ cvs login  | 
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       ( enter the CVS password: "cvsanon" ) | 
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   tcsh or csh shell: | 
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     $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack' | 
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     $ cvs login  | 
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       ( enter the CVS password: "cvsanon" ) | 
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| 61 | 
 cvs co MITgcm_contrib/high_res_cube/README.cs510 | 
 cvs co MITgcm_contrib/high_res_cube/README.cs510 | 
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 cvs co MITgcm_contrib/high_res_cube/code-mods | 
 cvs co MITgcm_contrib/high_res_cube/code-mods | 
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 cvs co MITgcm_contrib/high_res_cube/input | 
 cvs co MITgcm_contrib/high_res_cube/input | 
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 cd build | 
 cd build | 
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 \rm * | 
 \rm * | 
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 \cp ../../MITgcm_contrib/high_res_cube/code-mods/* . | 
 \cp ../../MITgcm_contrib/high_res_cube/code-mods/* . | 
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 \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . | 
 \cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/SIZE.h_216 SIZE.h  | 
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 \cp SIZE.h_216 SIZE.h | 
 ../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas | 
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 ../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas | 
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 make depend | 
 make depend | 
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 make -j | 
 make -j 8 | 
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 cd ../run | 
 cd ../run | 
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 \rm * | 
 \rm * | 
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 \cp ../../MITgcm_contrib/high_res_cube/input/* . | 
 \cp ../../MITgcm_contrib/high_res_cube/input/* . | 
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 ln -sf ../../run_template/* . | 
 \ln -sf ../../run_template/* . | 
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 \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W* h*[6-7] PHCT* | 
 \rm *192_94* *.m heff_* pickup* A* D* E* | 
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 \rm G*all.bin G*dig.bin L* PHC* W* | 
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 \rm saltInit.cube78 thetaInit.cube78 | 
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 \mv data.seaice_hr data.seaice | 
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 \mv data.exf_hr data.exf | 
 \mv data.exf_hr data.exf | 
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 \mv data_hr data | 
 \mv data_hr data | 
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 ln -sf ../../run_template/pickup.0000000216.cube74 pickup.0000000216 | 
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 ln -sf ../../run_template/pickup_seaice.0000000216.cube74 pickup_seaice.0000000216 | 
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 \cp ../build/mitgcmuv . | 
 \cp ../build/mitgcmuv . | 
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 \mv job_altix cube74 | 
 \mv job_altix cube86 | 
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 qsub cube74 | 
 qsub cube86 |