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dimitri |
1.1 |
Instructions for setting up a cube-sphere integration |
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with sea-ice on the cs32 grid. Is meant to be used as |
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a preliminary sanity check for the cs510 configuration. |
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########################################################################## |
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# getting the code from anonymous CVS server |
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dimitri |
1.7 |
cvs co -P MITgcm_contrib/high_res_cube/README.cs32 |
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dimitri |
1.6 |
cvs co -P MITgcm_contrib/high_res_cube/code-mods |
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dimitri |
1.7 |
cvs co -P MITgcm_contrib/high_res_cube/input |
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cvs co -P MITgcm_contrib/high_res_cube/results |
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cvs co -P MITgcm_code |
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cvs co -P MITgcm/verification/global_ocean.cs32x15/input |
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cvs co -P MITgcm/verification/tutorial_held_suarez_cs/input |
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dimitri |
1.1 |
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########################################################################## |
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# 32*32*6*15, 1-cpu cube sphere |
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dimitri |
1.2 |
cd MITgcm |
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mkdir build run |
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cd build |
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\rm * |
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\cp ../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
1.1 |
\rm CPP_EEOPTIONS.h |
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dimitri |
1.2 |
../tools/genmake2 |
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make depend |
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dimitri |
1.10 |
make -j 16 |
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dimitri |
1.2 |
cd ../run |
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dimitri |
1.1 |
\rm * |
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dimitri |
1.2 |
\cp ../verification/tutorial_held_suarez_cs/input/grid* . |
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\cp ../verification/global_ocean.cs32x15/input/lev_*_cs_15k.bin . |
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\cp ../verification/global_ocean.cs32x15/input/bathy_Hmin50.bin . |
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\cp ../../MITgcm_contrib/high_res_cube/input/* . |
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dimitri |
1.11 |
\cp data.pkg_lr data.pkg |
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\cp data.diagnostics_lr data.diagnostics |
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dimitri |
1.1 |
../build/mitgcmuv >& output.txt |
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dimitri |
1.3 |
emacs output.txt ../../MITgcm_contrib/high_res_cube/results/output.txt |
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dimitri |
1.1 |
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dimitri |
1.8 |
to use matlab to look at the output: |
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dimitri |
1.1 |
matlab |
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for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ... |
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'surForcT','oceTAUX','oceTAUY','surForcS'} |
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tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]); |
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cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause |
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end |
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heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]); |
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mask=0*heff; mask(find(heff>.001))=1; |
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uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]); |
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vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]); |
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clf |
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subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3') |
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subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6') |
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subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3') |
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subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6') |
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dimitri |
1.2 |
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dimitri |
1.1 |
########################################################################## |
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dimitri |
1.7 |
# 32*32*6*15, 176-tile, 1-cpu cube sphere experiment |
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# example that has 16 blank tiles |
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dimitri |
1.1 |
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cd ../build |
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\rm * |
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dimitri |
1.2 |
\cp ../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
1.7 |
\cp ../utils/exch2/code-mods/s176t_8x4/SIZE.h . |
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ex - SIZE.h >> /dev/null <<EOF |
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/OLx = |
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c |
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& OLx = 5, |
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. |
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/OLy = |
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c |
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& OLy = 5, |
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. |
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w |
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q |
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EOF |
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dimitri |
1.2 |
\rm CPP_EEOPTIONS.h |
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../tools/genmake2 |
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dimitri |
1.1 |
make depend |
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dimitri |
1.2 |
make -j |
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dimitri |
1.8 |
cd .. |
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mv run run_orig |
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mkdir run |
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cd run |
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dimitri |
1.2 |
\cp ../verification/tutorial_held_suarez_cs/input/grid* . |
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\cp ../verification/global_ocean.cs32x15/input/lev_*_cs_15k.bin . |
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\cp ../verification/global_ocean.cs32x15/input/bathy_Hmin50.bin . |
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dimitri |
1.7 |
\cp ../utils/exch2/code-mods/data.exch2.16_blk data.exch2 |
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dimitri |
1.2 |
\cp ../../MITgcm_contrib/high_res_cube/input/* . |
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dimitri |
1.1 |
../build/mitgcmuv >& output.txt |
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dimitri |
1.8 |
to use matlab to compare to previous solution: |
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matlab |
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for f={'ETAN','oceTAUY','SIhsnow','surForcS','KPPhbl','PHIBOT', ... |
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'SIuice','surForcT','MXLDEPTH','SIarea','SIvice','UVEL_k1', ... |
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'oceQsw','SIheff','SSS','VVEL_k1','oceTAUX','SIhsalt','SST'} |
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t1=readbin(['../run_orig/' f{1} '.0000000072.data'],[32*6 32]); |
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t2=readbin([f{1} '.0000000072.data'],[32*6 32]); |
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clf, subplot(311), mypcolor(t1'); thincolorbar, title(f{1}) |
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subplot(312), mypcolor(t2'); thincolorbar |
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subplot(313), mypcolor(t2'-t1'); thincolorbar, pause |
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end |
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for f={'YG','YC','XG','XC','RAZ','RAW','RAS','RAC','hFacW','hFacS', ... |
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'hFacC','Depth','DYG','DYC','DXG','DXC','AngleSN','AngleCS'} |
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t1=readbin(['../run_orig/' f{1} '.data'],[32*6 32]); |
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t2=readbin([f{1} '.data'],[32*6 32]); |
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clf, subplot(311), mypcolor(t1'); thincolorbar, title(f{1}) |
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subplot(312), mypcolor(t2'); thincolorbar |
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subplot(313), mypcolor(t2'-t1'); thincolorbar, pause |
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end |
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dimitri |
1.2 |
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dimitri |
1.1 |
########################################################################## |
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dimitri |
1.4 |
# 32*32*6*15, 2-cpu cube sphere on the NAS altices with ifort |
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dimitri |
1.1 |
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dimitri |
1.2 |
cd MITgcm |
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mkdir build run |
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cd build |
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\rm * |
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\cp ../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
1.5 |
\mv SIZE.h_mpi SIZE.h |
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dimitri |
1.3 |
../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas |
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dimitri |
1.1 |
make depend |
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dimitri |
1.9 |
make -j 8 |
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dimitri |
1.2 |
cd ../run |
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\rm * |
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\cp ../verification/tutorial_held_suarez_cs/input/grid* . |
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\cp ../verification/global_ocean.cs32x15/input/lev_*_cs_15k.bin . |
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\cp ../verification/global_ocean.cs32x15/input/bathy_Hmin50.bin . |
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\cp ../../MITgcm_contrib/high_res_cube/input/* . |
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dimitri |
1.1 |
mpirun -np 2 ../build/mitgcmuv |
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dimitri |
1.4 |
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########################################################################## |
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# 32*32*6*15, 2-cpu cube sphere on the JPL altices with ifort |
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cd MITgcm |
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mkdir build run |
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cd build |
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\rm * |
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\cp ../../MITgcm_contrib/high_res_cube/code-mods/* . |
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dimitri |
1.5 |
\mv SIZE.h_mpi SIZE.h |
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dimitri |
1.4 |
../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_jpl |
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make depend |
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make -j |
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cd ../run |
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\rm * |
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\cp ../verification/tutorial_held_suarez_cs/input/grid* . |
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\cp ../verification/global_ocean.cs32x15/input/lev_*_cs_15k.bin . |
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\cp ../verification/global_ocean.cs32x15/input/bathy_Hmin50.bin . |
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\cp ../../MITgcm_contrib/high_res_cube/input/* . |
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mpirun -np 2 ../build/mitgcmuv |
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