code_shallow_openad2/RefTrans/doDiff.bash

for i in "ad_input_code_sf.f" "ad_input_code_sf.w2f.f" "ad_input_code_sf.w2f.canon.f" "ad_input_code_sf.w2f.canon.xaif" "ad_input_code_sf.w2f.canon.xb.xaif" "ad_input_code_sf.w2f.canon.xb.x2w.w2f.f" "ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.f" "ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.pp.f" "ad_input_code.w2f.canon.xb.x2w.w2f.rs.pp.f" "m.out"
do 
echo "$i old reference (<) vs new file (>)"
echo "------------------------------------------------------------------------------" 
diff -I "file translated from " $i ../../../../../MITgcm/verification/OpenAD/build_shallow_openad/$i
hasDiff=$(diff -I "file translated from " $i ../../../../../MITgcm/verification/OpenAD/build_shallow_openad/$i)
if [ "$hasDiff" != "" ] 
then 
echo "update refernce for $i? [y]/n "
read answer
if [ "$answer" == "n" ] 
then 
  echo "not updated"
else
  echo "copying"
  cp ../../../../../MITgcm/verification/OpenAD/build_shallow_openad/$i $i
fi
fi
done
1	utke	1.1	for i in "ad_input_code_sf.f" "ad_input_code_sf.w2f.f" "ad_input_code_sf.w2f.canon.f" "ad_input_code_sf.w2f.canon.xaif" "ad_input_code_sf.w2f.canon.xb.xaif" "ad_input_code_sf.w2f.canon.xb.x2w.w2f.f" "ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.f" "ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.pp.f" "ad_input_code.w2f.canon.xb.x2w.w2f.rs.pp.f" "m.out"
2			do
3			echo "$i old reference (<) vs new file (>)"
4			echo "------------------------------------------------------------------------------"
5			diff -I "file translated from " $i ../../../../../MITgcm/verification/OpenAD/build_shallow_openad/$i
6			hasDiff=$(diff -I "file translated from " $i ../../../../../MITgcm/verification/OpenAD/build_shallow_openad/$i)
7			if [ "$hasDiff" != "" ]
8			then
9			echo "update refernce for $i? [y]/n "
10			read answer
11			if [ "$answer" == "n" ]
12			then
13			echo "not updated"
14			else
15			echo "copying"
16			cp ../../../../../MITgcm/verification/OpenAD/build_shallow_openad/$i $i
17			fi
18			fi
19			done