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heimbach |
1.1 |
Starting a configuration for OpenAD |
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19-Aug-2005, heimbach@mit.edu, utke@mcs.anl.gov, cnh@mit.edu |
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############################################################ |
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This experiment is derived from global_ocean.90x40x15, |
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but excludes packages gmredi, kpp. |
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STEP 1: |
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###### |
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To bypass incomplete canonicalizer, convert COMMON blocks to MODULES. |
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Successfully completed. |
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The built process needed to be modified, and some routines |
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needed changes. Most changes were commited to default routines, |
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the remaining changes are kept in code/ for now. |
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To build: |
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-------- |
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o short version: |
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--------------- |
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make makefile ; make depend ; make cb2m ; make makefile ; make small_f ; make allmods ; make |
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o long version: |
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-------------- |
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# (chdir to built/; assume we are in built/) |
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# |
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# generate makefile using ifort and modified genmake2 in ../code/ |
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../code/genmake2 -of ../../../tools/build_options/linux_ia32_ifort -mods ../code |
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# |
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# make dependencies |
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make depend |
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# |
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# invoke script to convert COMMON block headers to MODULE headers |
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# converts FILE.h to FILE_mod.h which uses newi module FILE_mod.F90 |
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make cb2m |
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# |
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# re-generate makefile which takes into account newly created files |
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# FILE_mod.h, FILE_mod.F90 |
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make makefile |
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# |
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# make .f, .f90 |
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make small_f |
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# |
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# first compile all module files .f90 |
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make allmods |
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# |
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# compile everything else |
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make |
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To clean: |
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-------- |
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# Since soft links get overwritten, for now do: |
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make CLEAN ; rm *.F *.F90 *.h |
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to run: |
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------ |
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# paremeter files are in input/ |
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ln -s ../input/* . |
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# initial and forcing fields are elsewhere; |
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# get these from verif. exp. global_ocean.90x40x15/input/*.bin |
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ln -s ../../global_ocean.90x40x15/input/*.bin . |
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./mitgcmuv >! output.txt |
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STEP 2: |
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###### |
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Generate code for AD-related routines. |
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Similar to step 1, but look in code_ad/ instead of code/ |
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To build: |
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-------- |
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o short version: |
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--------------- |
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../code_ad/genmake2 -of ../../../tools/build_options/linux_ia32_ifort -adof ../../../tools/adjoint_options/adjoint_f95 -mods ../code_ad |
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make adall |
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heimbach |
1.2 |
STEP 3: |
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###### |
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Compare reference outputs. |
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heimbach |
1.3 |
------------------ |
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SINGLE-LAYER SETUP: _openad, _taf |
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------------------ |
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heimbach |
1.2 |
# uncompress outputs in results_... directories: |
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gunzip ../results_shallow_*/output.txt.gz |
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# extract gradients from TAF-generated adjoint: |
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grep grad-res ../results_shallow_taf/output.txt |
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# extract gradients from OpenAD-generated adjoint: |
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grep ' salt/theta ' ../results_shallow_openad/output.txt |
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The two positions tested via gradient checks (results_shallow_taf) are |
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(i,j,k) = (43,2,1) and (44,2,1) |
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Find corresponding locations in ' salt/theta ' output |
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(which outputs whole theta, salt gradient) |
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heimbach |
1.1 |
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heimbach |
1.3 |
------------------ |
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15-LAYER-SETUP : _openad2, _taf2 |
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------------------ |
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first working setup of 05-Aug-2006 ran for 12 timesteps |
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on itrda.acesgrid.org under |
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/net/ds-06/scratch-0/utke/cvs/MITgcm/verification/OpenAD/run_ph_baroclin/ |
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uses Atlantic heat transport cost function; |
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* OpenAD output is in results_shallow_openad2/ |
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grep ' salt/theta ' ../results_shallow_openad2/output.txt |
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* TAF output is in results_shallow_taf2/ |
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grep grad-res ../results_shallow_taf2/output.txt |
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The positions tested via gradient checks (results_shallow_taf2) are |
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(i,j,k) = (78,26,1) |
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------------------ |
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15-LAYER-SETUP WITH GMREDI: _openad3, _taf3 |
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------------------ |
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not yet run. |
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