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% |
| 2 |
% THIS IS NOT A FUNCTION ! |
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% |
| 4 |
% Plot time series of all variables in different ways |
| 5 |
% Outputs recording possible |
| 6 |
% |
| 7 |
|
| 8 |
clear |
| 9 |
global sla netcdf_domain |
| 10 |
pv_checkpath |
| 11 |
|
| 12 |
% Path and extension to find files: |
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pathname = strcat('netcdf-files',sla); |
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%pathname = strcat('netcdf-files-twice-daily',sla); |
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%pathname = strcat('netcdf-files-daily',sla); |
| 16 |
ext = 'nc'; |
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netcdf_domain = 'western_north_atlantic'; |
| 18 |
|
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% Date series: |
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ID = datenum(2000,12,31,12,0,0); % Start date |
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ID = datenum(2000,12,31,0,0,0); % Start date |
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ID = datenum(2001,1,1,12,0,0); % Start date |
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ID = datenum(2001,4,1,0,0,0); % Start date |
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%IDend = datenum(2001,2,26,12,0,0); % End date |
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IDend = datenum(2001,7,4,0,0,0); % End date |
| 26 |
|
| 27 |
dt = datenum(0,0,1,0,0,0); % Time step between input: 1 day |
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%dt = datenum(0,0,2,0,0,0); % Time step between input: 2 days |
| 29 |
%dt = datenum(0,0,7,0,0,0); % Time step between input: 1 week |
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%dt = datenum(0,0,0,12,0,0); % Time step between input: 12 hours |
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IDend = ID + 1*dt; % |
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nt = (IDend-ID)/dt; |
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|
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% Create TIME table: |
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for it = 1 : nt |
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ID = ID + dt; |
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snapshot = datestr(ID,'yyyymmddHHMM'); % For twice-daily data |
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% snapshot = datestr(ID,'yyyymmdd'); % For daily data |
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TIME(it,:) = snapshot; |
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end %for it |
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|
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|
| 43 |
% Some settings |
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iso = 25.25; % Which sigma-theta surface ? |
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getiso = 0; % We do not compute the isoST by default |
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outimg = 'img_tmp'; % Output directory |
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%outimg = 'img_tmp2'; % Output directory |
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%outimg = 'img_tmp3'; % Output directory |
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prtimg = 0; % Do we record figures as jpg files ? |
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|
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% Plot modules available: |
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sub = get_plotlist('eg_view_Timeserie','.'); |
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disp('Available plots:') |
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sub = get_plotlistdef('eg_view_Timeserie','.'); |
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disp('Set the variable <pl> in view_Timeserie.m with wanted plots') |
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|
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% Selected plots list: |
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pl = [7]; %getiso=1; |
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|
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% Verif plots: |
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disp(char(2));disp('You have choosed to plot:') |
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for i = 1 : length(pl) |
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disp(strcat(num2str(pl(i)),' -> ', sub(pl(i)).description ) ) |
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end |
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s = input(' Are you sure ([y]/n) ?','s'); |
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if ~isempty(s) & s == 'n' |
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return |
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end |
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|
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% To find a specific date |
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%find(str2num(TIME)==200103300000),break |
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|
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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% Video loop: |
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for it = 1 : nt |
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snapshot = TIME(it,:); |
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%titf='.section_32N';if ~exist(strcat(outimg,sla,'PV.',snapshot,titf,'.jpg'),'file') |
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|
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%%%%%%%%%%%%%%%% |
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% NETCDF files name: |
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filPV = 'PV'; |
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filST = 'SIGMATHETA'; |
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filT = 'THETA'; |
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filTx = 'TAUX'; |
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filTy = 'TAUY'; |
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filJFz = 'JFz'; |
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filJBz = 'JBz'; |
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filQnet = 'TFLUX'; |
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filQEk = 'QEk'; |
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%filMLD = 'KPPmld'; |
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filMLD = 'MLD'; |
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filOx = 'OMEGAX'; |
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filOy = 'OMEGAY'; |
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filZET = 'ZETA'; |
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filEKL = 'EKL'; |
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|
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|
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% Load fields: |
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disp('load fields...') |
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% (I keep proper axis for each variables in case of one day they would be different) |
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ferfile = strcat(pathname,sla,snapshot,sla,filPV,'.',netcdf_domain,'.',ext); |
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ncQ = netcdf(ferfile,'nowrite'); |
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[Qlon Qlat Qdpt] = coordfromnc(ncQ); |
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Q = ncQ{4}(:,:,:); clear ncQ ferfile |
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[nz ny nx] = size(Q); |
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%Qdpt = -Qdpt; |
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|
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ferfile = strcat(pathname,sla,snapshot,sla,filZET,'.',netcdf_domain,'.',ext); |
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ncZET = netcdf(ferfile,'nowrite'); |
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[ZETAlon ZETAlat ZETAdpt] = coordfromnc(ncZET); |
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ZETA = ncZET{4}(:,:,:); clear ncZET ferfile |
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% Move ZETA on the same grid as Q: |
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ZETA = ( ZETA(:,:,2:nx-1) + ZETA(:,:,1:nx-2) )./2; |
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ZETA = ( ZETA(:,2:ny-1,:) + ZETA(:,1:ny-2,:) )./2; |
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ZETAlon = ( ZETAlon(2:nx-1) + ZETAlon(1:nx-2) )./2; |
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ZETAlat = ( ZETAlat(2:ny-1) + ZETAlat(1:ny-2) )./2; |
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|
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ferfile = strcat(pathname,sla,snapshot,sla,filOx,'.',netcdf_domain,'.',ext); |
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ncOX = netcdf(ferfile,'nowrite'); |
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[OXlon OXlat OXdpt] = coordfromnc(ncOX); |
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OX = ncOX{4}(:,:,:); clear ncOX ferfile |
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% Move OMEGAx on the same grid as Q: |
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OX = ( OX(:,2:ny-1,:) + OX(:,1:ny-2,:) )./2; |
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OX = ( OX(2:nz-1,:,:) + OX(1:nz-2,:,:) )./2; |
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OXlat = ( OXlat(2:ny-1) + OXlat(1:ny-2) )./2; |
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OXdpt = ( OXdpt(2:nz-1) + OXdpt(1:nz-2) )./2; |
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|
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ferfile = strcat(pathname,sla,snapshot,sla,filOy,'.',netcdf_domain,'.',ext); |
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ncOY = netcdf(ferfile,'nowrite'); |
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[OYlon OYlat OYdpt] = coordfromnc(ncOY); |
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OY = ncOY{4}(:,:,:); clear ncOY ferfile |
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% Move OMEGAy on the same grid as Q: |
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OY = ( OY(2:nz-1,:,:) + OY(1:nz-2,:,:) )./2; |
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OY = ( OY(:,:,2:nx-1) + OY(:,:,1:nx-2) )./2; |
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OYdpt = ( OYdpt(2:nz-1) + OYdpt(1:nz-2) )./2; |
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OYlon = ( OYlon(2:nx-1) + OYlon(1:nx-2) )./2; |
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|
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|
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ferfile = strcat(pathname,sla,snapshot,sla,filST,'.',netcdf_domain,'.',ext); |
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ncST = netcdf(ferfile,'nowrite'); |
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[STlon STlat STdpt] = coordfromnc(ncST); |
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ST = ncST{4}(:,:,:); clear ncST ferfile |
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|
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ferfile = strcat(pathname,sla,snapshot,sla,filT,'.',netcdf_domain,'.',ext); |
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ncT = netcdf(ferfile,'nowrite'); |
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[Tlon Tlat Tdpt] = coordfromnc(ncT); |
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T = ncT{4}(:,:,:); clear ncT ferfile |
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|
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ferfile = strcat(pathname,sla,snapshot,sla,filTx,'.',netcdf_domain,'.',ext); |
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ncTx = netcdf(ferfile,'nowrite'); |
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[Txlon Txlat Txdpt] = coordfromnc(ncTx); |
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Tx = ncTx{4}(1,:,:); clear ncTx ferfile |
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ferfile = strcat(pathname,sla,snapshot,sla,filTy,'.',netcdf_domain,'.',ext); |
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ncTy = netcdf(ferfile,'nowrite'); |
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[Tylon Tylat Tydpt] = coordfromnc(ncTy); |
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Ty = ncTy{4}(1,:,:); clear ncTy ferfile |
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|
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ferfile = strcat(pathname,sla,snapshot,sla,filJFz,'.',netcdf_domain,'.',ext); |
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ncJFz = netcdf(ferfile,'nowrite'); |
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[JFzlon JFzlat JFzdpt] = coordfromnc(ncJFz); |
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JFz = ncJFz{4}(1,:,:); |
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|
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ferfile = strcat(pathname,sla,snapshot,sla,filJBz,'.',netcdf_domain,'.',ext); |
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ncJBz = netcdf(ferfile,'nowrite'); |
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[JBzlon JBzlat JBzdpt] = coordfromnc(ncJBz); |
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JBz = ncJBz{4}(1,:,:); |
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|
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ferfile = strcat(pathname,sla,snapshot,sla,filQnet,'.',netcdf_domain,'.',ext); |
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ncQnet = netcdf(ferfile,'nowrite'); |
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[Qnetlon Qnetlat Qnetdpt] = coordfromnc(ncQnet); |
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Qnet = ncQnet{4}(1,:,:); |
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% $$$ |
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% $$$ ferfile = strcat(pathname,sla,snapshot,sla,filQEk,'.',netcdf_domain,'.',ext); |
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% $$$ ncQEk = netcdf(ferfile,'nowrite'); |
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% $$$ [QEklon QEklat QEkdpt] = coordfromnc(ncQEk); |
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% $$$ QEk = ncQEk{4}(1,:,:); |
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% $$$ |
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ferfile = strcat(pathname,sla,snapshot,sla,filMLD,'.',netcdf_domain,'.',ext); |
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ncMLD = netcdf(ferfile,'nowrite'); |
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[MLDlon MLDlat MLDdpt] = coordfromnc(ncMLD); |
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MLD = ncMLD{4}(1,:,:); |
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|
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ferfile = strcat(pathname,sla,snapshot,sla,filEKL,'.',netcdf_domain,'.',ext); |
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ncEKL = netcdf(ferfile,'nowrite'); |
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[EKLlon EKLlat EKLdpt] = coordfromnc(ncEKL); |
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EKL = ncEKL{4}(1,:,:); |
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|
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|
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%%%%%%%%%%%%%%%% |
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% Q is defined on the same grid of ST but troncated by extrem 2 points, then here |
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% make all fields defined with same limits... |
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% In case of missing points, we add NaN. |
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disp('Reshape them') |
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ST = squeeze(ST(2:nz+1,2:ny+1,2:nx+1)); |
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STdpt = STdpt(2:nz+1); |
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STlon = STlon(2:nx+1); |
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STlat = STlat(2:ny+1); |
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T = squeeze(T(2:nz+1,2:ny+1,2:nx+1)); |
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Tdpt = Tdpt(2:nz+1); |
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Tlon = Tlon(2:nx+1); |
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Tlat = Tlat(2:ny+1); |
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JBz = squeeze(JBz(2:ny+1,2:nx+1)); |
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JBzlon = JBzlon(2:nx+1); |
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JBzlat = JBzlat(2:ny+1); |
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Qnet = squeeze(Qnet(2:ny+1,2:nx+1)); |
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Qnetlon = Qnetlon(2:nx+1); |
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Qnetlat = Qnetlat(2:ny+1); |
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MLD = squeeze(MLD(2:ny+1,2:nx+1)); |
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MLDlon = MLDlon(2:nx+1); |
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MLDlat = MLDlat(2:ny+1); |
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EKL = squeeze(EKL(2:ny+1,2:nx+1)); |
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EKLlon = EKLlon(2:nx+1); |
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EKLlat = EKLlat(2:ny+1); |
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ZETA = squeeze(ZETA(2:nz+1,:,:)); |
| 215 |
ZETA = cat(2,ZETA,ones(size(ZETA,1),1,size(ZETA,3)).*NaN); |
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ZETA = cat(2,ones(size(ZETA,1),1,size(ZETA,3)).*NaN,ZETA); |
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ZETA = cat(3,ZETA,ones(size(ZETA,1),size(ZETA,2),1).*NaN); |
| 218 |
ZETA = cat(3,ones(size(ZETA,1),size(ZETA,2),1).*NaN,ZETA); |
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ZETAdpt = ZETAdpt(2:nz+1); |
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ZETAlon = STlon; |
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ZETAlat = STlat; |
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OX = squeeze(OX(:,:,2:nx+1)); |
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OX = cat(1,OX,ones(1,size(OX,2),size(OX,3)).*NaN); |
| 224 |
OX = cat(1,ones(1,size(OX,2),size(OX,3)).*NaN,OX); |
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OX = cat(2,OX,ones(size(OX,1),1,size(OX,3)).*NaN); |
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OX = cat(2,ones(size(OX,1),1,size(OX,3)).*NaN,OX); |
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OXlon = STlon; |
| 228 |
OXlat = STlat; |
| 229 |
OXdpt = STdpt; |
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OY = squeeze(OY(:,2:ny+1,:)); |
| 231 |
OY = cat(1,OY,ones(1,size(OY,2),size(OY,3)).*NaN); |
| 232 |
OY = cat(1,ones(1,size(OY,2),size(OY,3)).*NaN,OY); |
| 233 |
OY = cat(3,OY,ones(size(OY,1),size(OY,2),1).*NaN); |
| 234 |
OY = cat(3,ones(size(OY,1),size(OY,2),1).*NaN,OY); |
| 235 |
OYlon = STlon; |
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OYlat = STlat; |
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OYdpt = STdpt; |
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|
| 239 |
|
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% Planetary vorticity: |
| 241 |
f = 2*(2*pi/86400)*sin(ZETAlat*pi/180); |
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[a f c]=meshgrid(ZETAlon,f,ZETAdpt); clear a c |
| 243 |
f = permute(f,[3 1 2]); |
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|
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% Apply mask: |
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MASK = ones(size(ST,1),size(ST,2),size(ST,3)); |
| 247 |
MASK(find(isnan(ST))) = NaN; |
| 248 |
T = T.*MASK; |
| 249 |
Qnet = Qnet.*squeeze(MASK(1,:,:)); |
| 250 |
|
| 251 |
|
| 252 |
% Grid: |
| 253 |
global domain subdomain1 subdomain2 subdomain3 |
| 254 |
grid_setup |
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subdomain = subdomain1; |
| 256 |
|
| 257 |
|
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%%%%%%%%%%%%%%%% |
| 259 |
% Here we determine the isosurface and its depth: |
| 260 |
if getiso |
| 261 |
disp('Get iso-ST') |
| 262 |
[Iiso mask] = subfct_getisoS(ST,iso); |
| 263 |
Diso = ones(size(Iiso)).*NaN; |
| 264 |
Qiso = ones(size(Iiso)).*NaN; |
| 265 |
for ix = 1 : size(ST,3) |
| 266 |
for iy = 1 : size(ST,2) |
| 267 |
if ~isnan(Iiso(iy,ix)) & ~isnan( Q(Iiso(iy,ix),iy,ix) ) |
| 268 |
Diso(iy,ix) = STdpt(Iiso(iy,ix)); |
| 269 |
Qiso(iy,ix) = Q(Iiso(iy,ix),iy,ix); |
| 270 |
end %if |
| 271 |
end, end %for iy, ix |
| 272 |
end %if |
| 273 |
|
| 274 |
|
| 275 |
|
| 276 |
%%%%%%%%%%%%%%%% |
| 277 |
% "Normalise" the PV: |
| 278 |
fO = 2*(2*pi/86400)*sin(32*pi/180); |
| 279 |
dST = 27.6-25.4; |
| 280 |
H = -1000; |
| 281 |
RHOo = 1000; |
| 282 |
Qref = -fO/RHOo*dST/H; |
| 283 |
if getiso, QisoN = Qiso./Qref; end |
| 284 |
|
| 285 |
|
| 286 |
%%%%%%%%%%%%%%%% |
| 287 |
%%%%%%%%%%%%%%%% |
| 288 |
% Plots: |
| 289 |
disp('Plots ...') |
| 290 |
|
| 291 |
|
| 292 |
for i = 1 : length(pl) |
| 293 |
disp(strcat('Plotting module:',sub(pl(i)).name)) |
| 294 |
eval(sub(pl(i)).name(1:end-2),'disp(''Oups scratch...'');return'); |
| 295 |
end |
| 296 |
|
| 297 |
|
| 298 |
%%%%%%%%%%%%%%%% |
| 299 |
%%%%%%%%%%%%%%%% |
| 300 |
|
| 301 |
%else,disp(strcat('Skip:',snapshot));end |
| 302 |
|
| 303 |
fclose('all'); |
| 304 |
|
| 305 |
|
| 306 |
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
| 307 |
end %for it |
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