/[MITgcm]/MITgcm_contrib/gael/verification/README

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-revision 1.4 by gforget,
Thu Apr 18 18:04:31 2013 UTC
+revision 1.5 by gforget,
Tue Oct 14 20:06:44 2014 UTC
 Line 1
- (last edit : oct. 3rd, 2012)
+ ( last edited : October 14th, 2014 -- author : Gael Forget )
  ---------------------------------------------------------------
  A) setup the experiments (incl. llc90 and cs32 core2.cnyf runs)
 Line 22 
 A) setup the experiments (incl. llc90 an
     If otherwise, see http://mitgcm.org/public/source_code.html
 ) step2 creates a directory global_oce_tmp_download that
     contains the experiments directories. Move them (incl.
-    global_oce_input_fields) to MITgcm/verification and cd to
+    global_oce_input_fields) to MITgcm/verification. Once you
-    that location. Once you have done this succesfully you may want
+    have done this succesfully you may want to remove the empty
-    to remove global_oce_tmp_download. We wont need it anymore.
+    global_oce_tmp_download directory. We wont need it anymore.
 ) exectute MITgcm with testreport. Two examples from one machine.
     To run the cs32 test on one cpu :
         ./testreport -t global_oce_cs32
-    And to run the llc90 test on 12 cpus, using mpi
+    And to run the llc90 test on 24 cpus, using mpi
-       ./testreport -match 6 -of=../tools/build_options/linux_amd64_gfortran -MPI 12 -command 'mpirun -np TR_NPROC ./mitgcmuv' -t global_oce_llc90
+       /testreport -of=../tools/build_options/linux_amd64_gfortran -MPI 24 -command 'mpirun -np TR_NPROC ./mitgcmuv' -t 'global_oce_cs32 global_oce_llc90'
     The optfile may be swaped for one that better suits your machine.
-) for llc90 experiment testreport should show something like
+) upon completion of the experiments, testreport should return something like
-     Y Y Y Y> 6<16 16 12 12 16 16 13 11 12 11 11 11 12 13 10 11  .  . pass  global_oce_llc90
+     Y Y Y Y>16<16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16  .  . pass  global_oce_cs32
-     Y Y Y N .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..  .  . N/O   global_oce_llc90.core2
+     Y Y Y Y> 7<16 16 12 12 16 16 13 11 13 12 10 11 13 13 11 11  .  . FAIL  global_oce_llc90
-     Y Y Y N .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..  .  . N/O   global_oce_llc90.ecco_v4
+     Y Y Y Y>10<16 13 12 12 13 16 14 11 13 13 11 11 13 13 11 11  .  . pass  global_oce_llc90.core2
-     Y Y Y N .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..  .  . N/O   global_oce_llc90.ecmwf
+     Y Y Y Y> 4<13 11  9  9 12 16 11  9 10 12 10 10 11 10  8 10  .  . FAIL  global_oce_llc90.ecco_v4
-    implying that the main experiment ran as expected in global_oce_llc90/run. In contrast
+     Y Y Y Y> 7<10 11 12 11 12 11 13 10 10 12 11 11 12 11 11 10  .  . FAIL  global_oce_llc90.ecmwf
-    the sub-experiments, by default, fail by omission of surface forcing fields. This
+    implying that the main experiment ran as expected in global_oce_llc90/run.
-    omission saves disk space and download time. In case you want to run the sub-experiments,
-    you will need to obtain additional inputs. Contact us about this if applies.
  -----------------------------------------------------------------------
  B) in case you want to change stuff on your end, or for troubleshooting
  -----------------------------------------------------------------------
-) to run the core2, ecmwf, and ecco_v4 subexperiments you will need
-    extra stuff in global_oce_input_fields. Contact us if need be.
-    As a side note, for the verification experiment purpose, you
-    do not want to link the large ecco data sets (RADS etc).
 ) In linking the experiments to one another we rely on 'build/genmake_local' and
  'input*/prepare_run' which may be worth a special mention, at least to new MITgcm users.
-Line 64 
 B) in case you want to change stuff on y
+Line 57 
 B) in case you want to change stuff on y
         e.g. global_oce_cs32 will get shared files from global_oce_llc90. If you move
         the directories appart, you will need to edit the paths in input*/prepare_run
 .4) the logic we followed in linking exps to one another :
-            - forward subexperiments : get local namelists then run input/prepare_run
+            - forward subexperiments : get input.xxx/namelists then run input/prepare_run
-            - adjoint subexperiments : get input_ad.x/namelists then run corresponding forward
+            - adjoint subexperiments : get input_ad.xxx/namelists then run corresponding forward
-            subexperiment input.x/prepare_run (that itself ultimately runs input/prepare_run)
+            subexperiment input.xxx/prepare_run (that itself ultimately runs input/prepare_run)
 ) In a couple .h files (that you find in the build directory after compiling)
     small size parameters are used as a default (to save memory of course)
     and they can become limiting in certain cases :
     - you may want to integrate the model beyond a few time steps. You will need to
-      edit ecco_cost.h, increase nchklev_1, nchklev_2, nchklev_3 and recompile.
+      increase nchklev_1/_2/_3 in tamc.h (e.g. use the values in tamc.h_itXX) and recompile.
     - you may want to use pkg/profiles (i.e. process insitu data via data.profiles).
-      You will need to edit profiles.h to increase NOBSGLOB, and recompile.
+      You will need to increase NOBSGLOB in profiles.h (e.g. use profiles.h_itXX), and recompile.
 ) To run the adjoint subexperiments you need the taf/tamc software/license.
  ---------------------------------------------------------------
- Cheers,
- Gael
  ---------------------------------------------------------------

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