/[MITgcm]/MITgcm_contrib/gael/setup_gcmfaces_and_mitprof.csh
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revision 1.2 by gforget, Thu Nov 4 01:01:27 2010 UTC revision 1.5 by gforget, Wed Jan 5 22:46:42 2011 UTC
# Line 1  Line 1 
1  #!/bin/csh -f  #!/bin/csh -f
2    
 echo '----- hello.'  
3  echo ''  echo ''
 echo '---- the setup of gcmfaces and profilesMatlabProcessing will start'  
 echo '---- by downloading the files from the MITgcm cvs server (in 5 sec)'  
4  echo ''  echo ''
5  sleep 5  echo '-- Disclaimer:'
6    echo '-- The free software programs may be freely distributed, provided that no '
7    echo '-- charge is levied, and that the disclaimer below is always attached to it. '
8    echo '-- The programs are provided as is without any guarantees or warranty.'
9    echo '-- Although the authors have attempted to find and correct any bugs in the '
10    echo '-- free software programs, the authors are not responsible for any damage or '
11    echo '-- losses of any kind caused by the use or misuse of the programs.'
12    echo '-- The authors are under no obligation to provide support, service, '
13    echo '-- corrections, or upgrades to the free software programs.'
14    echo ''
15    echo ''
16    
17  if ( -f ${HOME}/.cvspass ) then  echo '-- Hello.'
18    echo '(you already have a .cvspass file in your home. So we will try to use this one.)'  echo ''
19    echo '(If you see this message and nothing after it likely means that you will need)'  echo '---- the setup of gcmfaces and MITprof will start'
20    echo '(to rename your .cvspass so that the present script can create a new one.)'  echo '---- by downloading the files from the MITgcm cvs server.'
21  else  echo '---- This should take a couple minutes.'
22    echo ''
23    
24    if !( -f ${HOME}/.cvspass ) then
25    echo '/1 :pserver:cvsanon@mitgcm.org:2401/u/gcmpack Ah<Zy=0=' > ~/.cvspass    echo '/1 :pserver:cvsanon@mitgcm.org:2401/u/gcmpack Ah<Zy=0=' > ~/.cvspass
26  endif  endif
27    
28  setenv CVS_RSH ssh  setenv CVS_RSH ssh
29  cvs -q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -d gcmfaces MITgcm_contrib/gael/matlab_class  cvs -Q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P -d gcmfaces MITgcm_contrib/gael/matlab_class
30  cvs -q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack  co -d profilesMatlabProcessing MITgcm_contrib/gael/profilesMatlabProcessing  cvs -Q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack  co -P -d MITprof MITgcm_contrib/gael/profilesMatlabProcessing
31    
32  if !( -d gcmfaces) then  if !( -d gcmfaces) then
33      echo ''
34      echo '-- ERROR : code was not obtained from the cvs server.'
35      echo ''
36      echo '-- Most likely you already have a .cvspass file in your home dir, so '
37      echo '-- we tried to use this one and this did not work. In this event'
38      echo '-- you may want to try to login to the cvs as explained @ '
39      echo '-- http://mitgcm.org/public/source_code.html'  
40      echo '-- and execute this script again.'
41      echo ''
42   exit   exit
43  endif  endif
44    
45  echo ''  echo ''
46    echo '---- To test run the programs, we will download sample inputs.'
47    echo '---- This should take a couple minutes.'
48  echo ''  echo ''
 echo ''  
 echo '---- then we will download sample inputs to test run the codes (in 5 sec)'  
 sleep 5  
49    
50  wget http://mitgcm.org/~gforget/sample_input.tar.gz  wget -q http://mitgcm.org/~gforget/sample_input.tar.gz
51  gunzip sample_input.tar.gz  gunzip sample_input.tar.gz
52  tar xvf sample_input.tar  tar xf sample_input.tar
53  mv sample_input gcmfaces/.  mv sample_input gcmfaces/.
54  rm -f sample_input.tar  rm -f sample_input.tar
55    
56  echo ''  echo ''
57  echo '---- Your turn.'  echo '---- Now a matlab session will start, and test run the programs.'
58  echo ''  echo '---- This should take a couple minutes.'
 echo '---- To finish the initialization process:'  
 echo '---- (0) start matlab'  
 echo '---- (1) type "cd gcmfaces" and "gcmfaces_init"'  
 echo '---- This makes a few demo plots, that you will close afterwards.'  
 echo '---- (2) type "cd ../profilesMatlabProcessing" and "profiles_process_init"'  
 echo '---- This processes sample in-situ data files to the MITprof format.'  
59  echo ''  echo ''
60  echo '---- Once those two programs have run succesfully, you should be all set.'  sleep 1
61    
62    matlab -nojvm -nodisplay << EOF
63      fprintf('');
64    
65      %test gcmfaces:
66      cd gcmfaces;
67      global gcmfaces_skipplottest; gcmfaces_skipplottest=1;
68      global gcmfaces_verbose; gcmfaces_verbose=0;
69      gcmfaces_init;
70      cd ..;
71    
72      %test MITprof:
73      is_netcdf_avail=~isempty(which('ncexample'))|~isempty(which('netcdf.create'));
74      is_netcdf_redundant=~isempty(which('ncexample'))&~isempty(which('netcdf.create'));
75      if (is_netcdf_redundant);
76        fprintf('\n\n!! You have both the old mex/netcdf and the native matlab/netcdf installed.\n');
77        fprintf('!! Since they are conflicting (name clashes) you will likely run into trouble. \n');
78        fprintf('!! You may want to remove the old mex/netcdf stuff from your matlab path.\n\n');
79      end;
80      if ~is_netcdf_avail;
81        fprintf('\n !!!! Error: Using MITprof cannot be \n used until you get the netcdf toolbox.\n');
82      else;
83        cd MITprof;
84        global MITprof_verbose; MITprof_verbose=0;
85        profiles_process_init;
86        cd ..;
87      end;
88    
89      exit
90    EOF
91  echo ''  echo ''
 echo '---- To be able to use the packages in future matlab sessions, you will'  
 echo '---- need the lines that were added to your path during this one.'  
 echo '---- For example, you may want to copy those lines to your startup.m file.'  
92    
93  echo ''  echo ''
94    echo '---- Assuming the test runs have succesfully completed, you should be all set.'
95    echo ''
96    echo '---- To be able to use the packages in future matlab sessions, you will'
97    echo '---- need to add directories to your matlab path -- those are listed'
98    echo '---- in gcmfaces/gcmfaces_path.m and MITprof/MITprof_path.m -- executing'
99    echo '---- those two scripts is one way of completing your path.'
100  echo ''  echo ''
101  echo '---- bye.'  echo '-- Bye.'
102    
103    exit
104    
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