MITgcm_contrib/gael/setup_gcmfaces_and_mitprof.csh

#!/bin/csh -f

echo ''
echo ''
echo '-- Disclaimer:'
echo '-- The free software programs may be freely distributed, provided that no '
echo '-- charge is levied, and that the disclaimer below is always attached to it. '
echo '-- The programs are provided as is without any guarantees or warranty.'
echo '-- Although the authors have attempted to find and correct any bugs in the '
echo '-- free software programs, the authors are not responsible for any damage or '
echo '-- losses of any kind caused by the use or misuse of the programs.'
echo '-- The authors are under no obligation to provide support, service, '
echo '-- corrections, or upgrades to the free software programs.'
echo ''
echo ''

echo '-- Hello.'
echo ''
echo '---- the setup of gcmfaces and MITprof will start'
echo '---- by downloading the files from the MITgcm cvs server.'
echo '---- This should take a couple minutes.'
echo ''

if !( -f ${HOME}/.cvspass ) then
  echo '/1 :pserver:cvsanon@mitgcm.org:2401/u/gcmpack Ah<Zy=0=' > ~/.cvspass
endif

setenv CVS_RSH ssh
cvs -Q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P -d gcmfaces MITgcm_contrib/gael/matlab_class
cvs -Q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack  co -P -d MITprof MITgcm_contrib/gael/profilesMatlabProcessing
cvs -Q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack  co -P -d GRID MITgcm_contrib/gael/GRID
cvs -Q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack  co -P -d OCCAetcONv4GRID MITgcm_contrib/gael/OCCAetcONv4GRID

if !( -d gcmfaces) then
  echo ''
  echo '-- ERROR : code was not obtained from the cvs server.'
  echo ''
  echo '-- Most likely you already have a .cvspass file in your home dir, so '
  echo '-- we tried to use this one and this did not work. In this event'
  echo '-- you may want to try to login to the cvs as explained @ '
  echo '-- http://mitgcm.org/public/source_code.html'  
  echo '-- and execute this script again.'
  echo ''
 exit
endif

echo ''
echo '---- To test run the programs, we will download sample inputs.'
echo '---- This should take a couple minutes.'
echo ''

mkdir gcmfaces/sample_input

mv OCCAetcONv4GRID gcmfaces/sample_input/.

wget --recursive ftp://mit.ecco-group.org/ecco_for_las/version_4/release1/nctiles_climatology/ETAN

mv mit.ecco-group.org/ecco_for_las/version_4/release1/nctiles_climatology gcmfaces/sample_input/.
rm -rf mit.ecco-group.org

echo ''
echo '---- Now a matlab session will start, and test run the programs.'
echo '---- This should take a couple minutes.'
echo ''
sleep 1

matlab -nojvm -nodisplay << EOF
  fprintf('');

  %test gcmfaces:
  cd gcmfaces;
  gcmfaces_global; 
  myenv.verbose=1;
  myenv.lessplot=1;
  myenv.lesstest=1;
  cd ..;

  gcmfaces_init;

  %test MITprof:
  is_netcdf_avail=~isempty(which('ncexample'))|~isempty(which('netcdf.create'));
  is_netcdf_redundant=~isempty(which('ncexample'))&~isempty(which('netcdf.create'));
  if (is_netcdf_redundant);
    fprintf('\n\n!! You have both the old mex/netcdf and the native matlab/netcdf installed.\n');
    fprintf('!! Since they are conflicting (name clashes) you will likely run into trouble. \n');
    fprintf('!! You may want to remove the old mex/netcdf stuff from your matlab path.\n\n');
  end;
  if ~is_netcdf_avail; 
    fprintf('\n !!!! Error: Using MITprof cannot be \n used until you get the netcdf toolbox.\n'); 
  else;
    cd MITprof;
    profiles_process_init;
    cd ..;
  end;

  exit
EOF
echo ''

echo ''
echo '---- Assuming the test runs have succesfully completed, you should be all set.'
echo ''
echo '---- To be able to use the packages in future matlab sessions, you will'
echo '---- need to add directories to your matlab path -- those are listed'
echo '---- in gcmfaces/gcmfaces_path.m and MITprof/MITprof_path.m -- executing'
echo '---- those two scripts is one way of completing your path.'
echo ''
echo '-- Bye.' 

exit

1	#!/bin/csh -f
2
3	echo ''
4	echo ''
5	echo '-- Disclaimer:'
6	echo '-- The free software programs may be freely distributed, provided that no '
7	echo '-- charge is levied, and that the disclaimer below is always attached to it. '
8	echo '-- The programs are provided as is without any guarantees or warranty.'
9	echo '-- Although the authors have attempted to find and correct any bugs in the '
10	echo '-- free software programs, the authors are not responsible for any damage or '
11	echo '-- losses of any kind caused by the use or misuse of the programs.'
12	echo '-- The authors are under no obligation to provide support, service, '
13	echo '-- corrections, or upgrades to the free software programs.'
14	echo ''
15	echo ''
16
17	echo '-- Hello.'
18	echo ''
19	echo '---- the setup of gcmfaces and MITprof will start'
20	echo '---- by downloading the files from the MITgcm cvs server.'
21	echo '---- This should take a couple minutes.'
22	echo ''
23
24	if !( -f ${HOME}/.cvspass ) then
25	echo '/1 :pserver:cvsanon@mitgcm.org:2401/u/gcmpack Ah<Zy=0=' > ~/.cvspass
26	endif
27
28	setenv CVS_RSH ssh
29	cvs -Q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P -d gcmfaces MITgcm_contrib/gael/matlab_class
30	cvs -Q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P -d MITprof MITgcm_contrib/gael/profilesMatlabProcessing
31	cvs -Q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P -d GRID MITgcm_contrib/gael/GRID
32	cvs -Q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P -d OCCAetcONv4GRID MITgcm_contrib/gael/OCCAetcONv4GRID
33
34	if !( -d gcmfaces) then
35	echo ''
36	echo '-- ERROR : code was not obtained from the cvs server.'
37	echo ''
38	echo '-- Most likely you already have a .cvspass file in your home dir, so '
39	echo '-- we tried to use this one and this did not work. In this event'
40	echo '-- you may want to try to login to the cvs as explained @ '
41	echo '-- http://mitgcm.org/public/source_code.html'
42	echo '-- and execute this script again.'
43	echo ''
44	exit
45	endif
46
47	echo ''
48	echo '---- To test run the programs, we will download sample inputs.'
49	echo '---- This should take a couple minutes.'
50	echo ''
51
52	mkdir gcmfaces/sample_input
53
54	mv OCCAetcONv4GRID gcmfaces/sample_input/.
55
56	wget --recursive ftp://mit.ecco-group.org/ecco_for_las/version_4/release1/nctiles_climatology/ETAN
57
58	mv mit.ecco-group.org/ecco_for_las/version_4/release1/nctiles_climatology gcmfaces/sample_input/.
59	rm -rf mit.ecco-group.org
60
61	echo ''
62	echo '---- Now a matlab session will start, and test run the programs.'
63	echo '---- This should take a couple minutes.'
64	echo ''
65	sleep 1
66
67	matlab -nojvm -nodisplay << EOF
68	fprintf('');
69
70	%test gcmfaces:
71	cd gcmfaces;
72	gcmfaces_global;
73	myenv.verbose=1;
74	myenv.lessplot=1;
75	myenv.lesstest=1;
76	cd ..;
77
78	gcmfaces_init;
79
80	%test MITprof:
81	is_netcdf_avail=~isempty(which('ncexample'))\|~isempty(which('netcdf.create'));
82	is_netcdf_redundant=~isempty(which('ncexample'))&~isempty(which('netcdf.create'));
83	if (is_netcdf_redundant);
84	fprintf('\n\n!! You have both the old mex/netcdf and the native matlab/netcdf installed.\n');
85	fprintf('!! Since they are conflicting (name clashes) you will likely run into trouble. \n');
86	fprintf('!! You may want to remove the old mex/netcdf stuff from your matlab path.\n\n');
87	end;
88	if ~is_netcdf_avail;
89	fprintf('\n !!!! Error: Using MITprof cannot be \n used until you get the netcdf toolbox.\n');
90	else;
91	cd MITprof;
92	profiles_process_init;
93	cd ..;
94	end;
95
96	exit
97	EOF
98	echo ''
99
100	echo ''
101	echo '---- Assuming the test runs have succesfully completed, you should be all set.'
102	echo ''
103	echo '---- To be able to use the packages in future matlab sessions, you will'
104	echo '---- need to add directories to your matlab path -- those are listed'
105	echo '---- in gcmfaces/gcmfaces_path.m and MITprof/MITprof_path.m -- executing'
106	echo '---- those two scripts is one way of completing your path.'
107	echo ''
108	echo '-- Bye.'
109
110	exit
111