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gforget |
1.1 |
function [MITprof]=MITprof_stats_load(dirData,listData,varCur,varargin); |
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%[MITprof]=MITprof_stats_load(dirData,listData,varCur,varargin); |
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%object: loads a series of MITprof files, and computes |
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% normalized misfits for one variable |
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%input: dirData is the data directory name |
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% listData is the data file list (e.g. {'argo_in*'} or {'argo_in*','argo_at*'} ) |
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% varCur is 'T' or 'S' |
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% normFactor (optional) is the normalization factor (1./prof_?weight by default) |
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%output: MITprof.prof is the normalized misfit |
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%note: by assumption, all of the files in listData must share the same vertical grid |
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if nargin>3; normFactor=varargin{1}; else; normFactor=[]; end; |
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| 14 |
gforget |
1.2 |
useExtendedProfDepth=1; |
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| 16 |
gforget |
1.1 |
for iFile=1:length(listData); |
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fileData=dir([dirData listData{iFile}]); |
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gforget |
1.2 |
fileData=fileData.name |
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gforget |
1.1 |
MITprofCur=MITprof_load([dirData fileData]); |
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| 21 |
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% fixes: |
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if ~isfield(MITprofCur,'prof_S'); |
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tmp1=NaN*MITprofCur.prof_T; |
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MITprofCur.prof_S=tmp1; MITprofCur.prof_Sestim=tmp1; |
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MITprofCur.prof_Sweight=tmp1; MITprofCur.prof_Sflag=[]; |
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end; |
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% fixes |
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if ~isempty(normFactor);%replace weights with normFactor |
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eval(['tmp1=MITprofCur.prof_' varCur 'weight;']); |
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tmp1(tmp1>0)=normFactor; |
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eval(['MITprofCur.prof_' varCur 'weight=tmp1;']); |
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end; |
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if varCur=='T'; |
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tmp1=(MITprofCur.prof_Testim-MITprofCur.prof_T).*sqrt(MITprofCur.prof_Tweight); |
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tmp1(tmp1==0)=NaN; MITprofCur.prof=tmp1; |
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else; |
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tmp1=(MITprofCur.prof_Sestim-MITprofCur.prof_S).*sqrt(MITprofCur.prof_Sweight); |
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tmp1(tmp1==0)=NaN; MITprofCur.prof=tmp1; |
| 41 |
gforget |
1.2 |
end; |
| 42 |
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| 43 |
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listRm={ 'prof_T','prof_Testim','prof_Tweight','prof_Tflag','prof_Terr',... |
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'prof_S','prof_Sestim','prof_Sweight','prof_Sflag','prof_Serr'}; |
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for iRm=1:length(listRm); |
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if isfield(MITprofCur,listRm{iRm}); MITprofCur=rmfield(MITprofCur,listRm{iRm}); end; |
| 47 |
gforget |
1.1 |
end; |
| 48 |
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| 49 |
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MITprofCur.prof_date=datenum(num2str(MITprofCur.prof_YYYYMMDD*1e6+MITprofCur.prof_HHMMSS),'yyyymmddHHMMSS'); |
| 50 |
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%old: ii=find(MITprofCur.prof_date<datenum(1992,1,1)|MITprofCur.prof_date>datenum(2008,12,27)); MITprofCur.prof(ii,:)=NaN; |
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| 52 |
gforget |
1.2 |
if useExtendedProfDepth; |
| 53 |
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%use extended standard depth vector |
| 54 |
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all_depth=[ 0 5 10 15 20 25 30 35 45 50 55 65 75 85 95 100 ... |
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105 115 125 135 145 150 155 165 175 185 200 220 240 250 260 280 ... |
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300 320 340 360 380 400 420 440 460 480 500 550 600 650 700 750 ... |
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800 850 900 950 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 2000 2100 ... |
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2200 2300 2400 2500 2600 2700 2800 2900 3000 3100 3200 3300 3400 3500 3600 3700 ... |
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3800 3900 4000 4100 4200 4300 4400 4500 4600 4700 4800 4900 5000 5100 5200 5300 ... |
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5400 5500 5600 5700 5800 5900 6000]; |
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k_depth=NaN*zeros(1,MITprofCur.nr); |
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for kk=1:MITprofCur.nr; k_depth(kk)=find(MITprofCur.prof_depth(kk)==all_depth); end; |
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all_prof=NaN*ones(MITprofCur.np,length(all_depth)); |
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all_prof(:,k_depth)=MITprofCur.prof; |
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MITprofCur.prof=all_prof; |
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MITprofCur.nr=length(all_depth); |
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MITprofCur.prof_depth=all_depth; |
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gforget |
1.1 |
end; |
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| 70 |
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if iFile==1; |
| 71 |
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MITprof=MITprofCur; |
| 72 |
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else; |
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MITprof=MITprof_concat(MITprof,MITprofCur); |
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end; |
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clear MITprofCur; |
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end; |
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