gael/profilesMatlabProcessing/profiles_process_init.m

clear all

global MITprof_verbose; %to print notes to screen
if isempty(MITprof_verbose); MITprof_verbose=2; end;

if MITprof_verbose;
fprintf('generating database directory with reference datasets\n');
fprintf('===============================\n\n')
end;
status=mkdir('climatology');
gcmfaces_path;gcmfaces_dir=mydir;
eval(['!cp -r ' gcmfaces_dir 'sample_input/GRIDv4 climatology/']);
eval(['!cp ' gcmfaces_dir 'sample_input/OCCAetcONv4GRID/* climatology/']);
profiles_prep_load_fields(1);

if MITprof_verbose;
fprintf('adding directories to your path\n');
fprintf('===============================\n\n')
end;

global mydir; mydir=[pwd '/'];
fid=fopen([mydir 'MITprof_path.m'],'wt');
aa=sprintf(['global mydir; mydir=''' mydir ''';\n']);
aa=sprintf([aa 'addpath ' mydir ';\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_IO_v2/;\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_IO_external/;\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_misc/;\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_process_main_v2/;\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_stats/\n;']);
aa=sprintf([aa 'addpath ' mydir 'profiles_devel/\n;']);
aa=sprintf([aa 'addpath ' mydir 'database/\n;']);
eval(aa);
fid=fopen([mydir 'MITprof_path.m'],'wt'); fprintf(fid,aa); fclose(fid);

        
fprintf('\n\n basic MITprof test: started... \n');

if MITprof_verbose;
fprintf('\nrunning main program on sample data sets\n')
fprintf('========================================\n\n')
end;

%select the data source (and specific params) => wod05 sample
dataset=profiles_prep_select('wod05','90CTD');
%process it
profiles_prep_main(dataset);
%
fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);

%select the data source (and specific params) => argo sample
dataset=profiles_prep_select('argo','indian'); 
%process it
profiles_prep_main(dataset);
%
fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);

%select the data source (and specific params) => odv sample
dataset=profiles_prep_select('odv','ODVcompact_sample');
%process it
profiles_prep_main(dataset);
%
fprintf(['\n\nodv sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);

fprintf('\n basic MITprof test: completed. \n');

1	clear all
2
3	global MITprof_verbose; %to print notes to screen
4	if isempty(MITprof_verbose); MITprof_verbose=2; end;
5
6	if MITprof_verbose;
7	fprintf('generating database directory with reference datasets\n');
8	fprintf('===============================\n\n')
9	end;
10	status=mkdir('climatology');
11	gcmfaces_path;gcmfaces_dir=mydir;
12	eval(['!cp -r ' gcmfaces_dir 'sample_input/GRIDv4 climatology/']);
13	eval(['!cp ' gcmfaces_dir 'sample_input/OCCAetcONv4GRID/* climatology/']);
14	profiles_prep_load_fields(1);
15
16	if MITprof_verbose;
17	fprintf('adding directories to your path\n');
18	fprintf('===============================\n\n')
19	end;
20
21	global mydir; mydir=[pwd '/'];
22	fid=fopen([mydir 'MITprof_path.m'],'wt');
23	aa=sprintf(['global mydir; mydir=''' mydir ''';\n']);
24	aa=sprintf([aa 'addpath ' mydir ';\n']);
25	aa=sprintf([aa 'addpath ' mydir 'profiles_IO_v2/;\n']);
26	aa=sprintf([aa 'addpath ' mydir 'profiles_IO_external/;\n']);
27	aa=sprintf([aa 'addpath ' mydir 'profiles_misc/;\n']);
28	aa=sprintf([aa 'addpath ' mydir 'profiles_process_main_v2/;\n']);
29	aa=sprintf([aa 'addpath ' mydir 'profiles_stats/\n;']);
30	aa=sprintf([aa 'addpath ' mydir 'profiles_devel/\n;']);
31	aa=sprintf([aa 'addpath ' mydir 'database/\n;']);
32	eval(aa);
33	fid=fopen([mydir 'MITprof_path.m'],'wt'); fprintf(fid,aa); fclose(fid);
34
35
36	fprintf('\n\n basic MITprof test: started... \n');
37
38	if MITprof_verbose;
39	fprintf('\nrunning main program on sample data sets\n')
40	fprintf('========================================\n\n')
41	end;
42
43	%select the data source (and specific params) => wod05 sample
44	dataset=profiles_prep_select('wod05','90CTD');
45	%process it
46	profiles_prep_main(dataset);
47	%
48	fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
49
50	%select the data source (and specific params) => argo sample
51	dataset=profiles_prep_select('argo','indian');
52	%process it
53	profiles_prep_main(dataset);
54	%
55	fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
56
57	%select the data source (and specific params) => odv sample
58	dataset=profiles_prep_select('odv','ODVcompact_sample');
59	%process it
60	profiles_prep_main(dataset);
61	%
62	fprintf(['\n\nodv sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
63
64	fprintf('\n basic MITprof test: completed. \n');
65