gael/profilesMatlabProcessing/profiles_process_init.m

clear all

global MITprof_verbose; %to print notes to screen
if isempty(MITprof_verbose); MITprof_verbose=2; end;

if MITprof_verbose;
fprintf('creating database directory with reference datasets\n');
fprintf('===============================\n\n')
end;
if ~exist('climatology','dir'), status=mkdir('climatology'); end
gcmfaces_path;gcmfaces_dir=mydir;
eval(['!cp -r ' gcmfaces_dir 'sample_input/GRIDv4 climatology/']);
eval(['!cp ' gcmfaces_dir 'sample_input/OCCAetcONv4GRID/* climatology/']);

if MITprof_verbose;
fprintf('adding directories to your path\n');
fprintf('===============================\n\n')
end;

global mydir; mydir=[pwd '/'];
fid=fopen([mydir 'MITprof_path.m'],'wt');
aa=sprintf(['global mydir; mydir=''' mydir ''';\n']);
aa=sprintf([aa 'addpath ' mydir ';\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_IO_v2/;\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_IO_external/;\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_misc/;\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_process_main_v2/;\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_stats/;\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_devel/;\n']);
aa=sprintf([aa 'addpath ' mydir 'climatology/;\n']);
eval(aa);
fid=fopen([mydir 'MITprof_path.m'],'wt'); fprintf(fid,aa); fclose(fid);

        
if MITprof_verbose;
fprintf('\ngenerating .mat files for reference grid and climatology\n')
fprintf('========================================\n\n')
end;
profiles_prep_load_fields(1);

fprintf('\n\n basic MITprof test: started... \n');

if MITprof_verbose;
fprintf('\nrunning main program on sample data sets\n')
fprintf('========================================\n\n')
end;

%select the data source (and specific params) => wod05 sample
dataset=profiles_prep_select('wod05','90CTD');
%process it
profiles_prep_main(dataset);
%
fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);

%select the data source (and specific params) => argo sample
dataset=profiles_prep_select('argo','indian'); 
%process it
profiles_prep_main(dataset);
%
fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);

%select the data source (and specific params) => odv sample
dataset=profiles_prep_select('odv','ODVcompact_sample');
%process it
profiles_prep_main(dataset);
%
fprintf(['\n\nodv sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);

fprintf('\n basic MITprof test: completed. \n');

1	clear all
2
3	global MITprof_verbose; %to print notes to screen
4	if isempty(MITprof_verbose); MITprof_verbose=2; end;
5
6	if MITprof_verbose;
7	fprintf('creating database directory with reference datasets\n');
8	fprintf('===============================\n\n')
9	end;
10	if ~exist('climatology','dir'), status=mkdir('climatology'); end
11	gcmfaces_path;gcmfaces_dir=mydir;
12	eval(['!cp -r ' gcmfaces_dir 'sample_input/GRIDv4 climatology/']);
13	eval(['!cp ' gcmfaces_dir 'sample_input/OCCAetcONv4GRID/* climatology/']);
14
15	if MITprof_verbose;
16	fprintf('adding directories to your path\n');
17	fprintf('===============================\n\n')
18	end;
19
20	global mydir; mydir=[pwd '/'];
21	fid=fopen([mydir 'MITprof_path.m'],'wt');
22	aa=sprintf(['global mydir; mydir=''' mydir ''';\n']);
23	aa=sprintf([aa 'addpath ' mydir ';\n']);
24	aa=sprintf([aa 'addpath ' mydir 'profiles_IO_v2/;\n']);
25	aa=sprintf([aa 'addpath ' mydir 'profiles_IO_external/;\n']);
26	aa=sprintf([aa 'addpath ' mydir 'profiles_misc/;\n']);
27	aa=sprintf([aa 'addpath ' mydir 'profiles_process_main_v2/;\n']);
28	aa=sprintf([aa 'addpath ' mydir 'profiles_stats/;\n']);
29	aa=sprintf([aa 'addpath ' mydir 'profiles_devel/;\n']);
30	aa=sprintf([aa 'addpath ' mydir 'climatology/;\n']);
31	eval(aa);
32	fid=fopen([mydir 'MITprof_path.m'],'wt'); fprintf(fid,aa); fclose(fid);
33
34
35	if MITprof_verbose;
36	fprintf('\ngenerating .mat files for reference grid and climatology\n')
37	fprintf('========================================\n\n')
38	end;
39	profiles_prep_load_fields(1);
40
41	fprintf('\n\n basic MITprof test: started... \n');
42
43	if MITprof_verbose;
44	fprintf('\nrunning main program on sample data sets\n')
45	fprintf('========================================\n\n')
46	end;
47
48	%select the data source (and specific params) => wod05 sample
49	dataset=profiles_prep_select('wod05','90CTD');
50	%process it
51	profiles_prep_main(dataset);
52	%
53	fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
54
55	%select the data source (and specific params) => argo sample
56	dataset=profiles_prep_select('argo','indian');
57	%process it
58	profiles_prep_main(dataset);
59	%
60	fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
61
62	%select the data source (and specific params) => odv sample
63	dataset=profiles_prep_select('odv','ODVcompact_sample');
64	%process it
65	profiles_prep_main(dataset);
66	%
67	fprintf(['\n\nodv sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
68
69	fprintf('\n basic MITprof test: completed. \n');
70