/[MITgcm]/MITgcm_contrib/gael/profilesMatlabProcessing/profiles_process_init.m
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revision 1.1 by gforget, Thu Oct 21 19:40:17 2010 UTC revision 1.8 by roquet, Wed Apr 27 21:13:16 2011 UTC
# Line 1  Line 1 
1    clear all
2    
3  fprintf('adding directories to your path\n');  global MITprof_verbose; %to print notes to screen
4  fprintf('===============================\n\n\n')  if isempty(MITprof_verbose); MITprof_verbose=2; end;
 mydir=[pwd '/'];  
 eval(['addpath ' mydir 'profiles_IO_v2/;']);  
 eval(['addpath ' mydir 'profiles_IO_external/;']);  
 eval(['addpath ' mydir 'profiles_misc/;']);  
 eval(['addpath ' mydir 'profiles_process_main_v2/;']);  
 eval(['addpath ' mydir 'profiles_genericgrid/;']);  
5    
6    if MITprof_verbose;
7    fprintf('generating database directory with reference datasets\n');
8    fprintf('===============================\n\n')
9    end;
10    status=mkdir('climatology');
11    gcmfaces_path;gcmfaces_dir=mydir;
12    eval(['!cp ' gcmfaces_dir 'sample_input/GRIDv4 climatology/']);
13    eval(['!cp ' gcmfaces_dir 'sample_input/OCCAetcONv4GRID/* climatology/']);
14    profiles_prep_load_fields(1);
15    
16    if MITprof_verbose;
17    fprintf('adding directories to your path\n');
18    fprintf('===============================\n\n')
19    end;
20    
21  fprintf('running main program on sample data sets\n')  global mydir; mydir=[pwd '/'];
22  fprintf('========================================\n\n\n')  fid=fopen([mydir 'MITprof_path.m'],'wt');
23    aa=sprintf(['global mydir; mydir=''' mydir ''';\n']);
24  %remove old results:  aa=sprintf([aa 'addpath ' mydir ';\n']);
25  !\rm profiles_samples/wod05_sample/wod05_CTD_1990s.nc;  aa=sprintf([aa 'addpath ' mydir 'profiles_IO_v2/;\n']);
26  !\rm profiles_samples/argo_sample/argo_indian.nc;  aa=sprintf([aa 'addpath ' mydir 'profiles_IO_external/;\n']);
27    aa=sprintf([aa 'addpath ' mydir 'profiles_misc/;\n']);
28    aa=sprintf([aa 'addpath ' mydir 'profiles_process_main_v2/;\n']);
29    aa=sprintf([aa 'addpath ' mydir 'profiles_stats/\n;']);
30    aa=sprintf([aa 'addpath ' mydir 'profiles_devel/\n;']);
31    aa=sprintf([aa 'addpath ' mydir 'database/\n;']);
32    eval(aa);
33    fid=fopen([mydir 'MITprof_path.m'],'wt'); fprintf(fid,aa); fclose(fid);
34    
35            
36    fprintf('\n\n basic MITprof test: started... \n');
37    
38    if MITprof_verbose;
39    fprintf('\nrunning main program on sample data sets\n')
40    fprintf('========================================\n\n')
41    end;
42    
43  %select the data source (and specific params) => wod05 sample  %select the data source (and specific params) => wod05 sample
44  dataset=profiles_prep_select('wod05','90CTD');  dataset=profiles_prep_select('wod05','90CTD');
45  %process it  %process it
46  profiles_prep_main;  profiles_prep_main(dataset);
47  %  %
48  fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc \n\n']);  fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
49    
50  %select the data source (and specific params) => argo sample  %select the data source (and specific params) => argo sample
51  dataset=profiles_prep_select('argo','indian');  dataset=profiles_prep_select('argo','indian');
52  %process it  %process it
53  profiles_prep_main;  profiles_prep_main(dataset);
54  %  %
55  fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc \n\n']);  fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
56    
57    %select the data source (and specific params) => odv sample
58    dataset=profiles_prep_select('odv','ODVcompact_sample');
59    %process it
60    profiles_prep_main(dataset);
61    %
62    fprintf(['\n\nodv sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
63    
64    fprintf('\n basic MITprof test: completed. \n');
65    
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