/[MITgcm]/MITgcm_contrib/gael/profilesMatlabProcessing/profiles_process_init.m
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revision 1.6 by gforget, Thu Jan 6 23:23:00 2011 UTC revision 1.15 by gforget, Mon Jul 28 21:29:41 2014 UTC
# Line 1  Line 1 
1    clear all
2    
3  global MITprof_verbose; %to print notes to screen  gcmfaces_global;
 if isempty(MITprof_verbose); MITprof_verbose=2; end;  
4    
5  if MITprof_verbose;  if myenv.verbose;
6  fprintf('adding directories to your path\n');  fprintf('creating database directory with reference datasets\n');
7  fprintf('===============================\n\n')  fprintf('===============================\n\n')
8  end;  end;
9    if ~exist('climatology','dir'), status=mkdir('climatology'); end
10    gcmfaces_global;
11    eval(['!ln -s ' myenv.gcmfaces_dir 'sample_input/GRIDv4 climatology/']);
12    eval(['!ln -s ' myenv.gcmfaces_dir 'sample_input/OCCAetcONv4GRID/* climatology/']);
13    
14  global mydir; mydir=[pwd '/'];  if myenv.verbose;
15  fid=fopen([mydir 'MITprof_path.m'],'wt');  fprintf('adding directories to your path\n');
16  aa=sprintf(['global mydir; mydir=''' mydir ''';\n']);  fprintf('===============================\n\n')
17  aa=sprintf([aa 'addpath ' mydir ';\n']);  end;
18  aa=sprintf([aa 'addpath ' mydir 'profiles_IO_v2/;\n']);  MITprof_global;
 aa=sprintf([aa 'addpath ' mydir 'profiles_IO_external/;\n']);  
 aa=sprintf([aa 'addpath ' mydir 'profiles_misc/;\n']);  
 aa=sprintf([aa 'addpath ' mydir 'profiles_process_main_v2/;\n']);  
 aa=sprintf([aa 'addpath ' mydir 'profiles_stats/\n;']);  
 aa=sprintf([aa 'addpath ' mydir 'profiles_devel/\n;']);  
 eval(aa);  
 fid=fopen([mydir 'MITprof_path.m'],'wt'); fprintf(fid,aa); fclose(fid);  
19    
20                    
21    if myenv.verbose;
22    fprintf('\ngenerating .mat files for reference grid and climatology\n')
23    fprintf('========================================\n\n')
24    end;
25    profiles_prep_load_fields(1);
26    
27  fprintf('\n\n basic MITprof test: started... \n');  fprintf('\n\n basic MITprof test: started... \n');
28    
29  if MITprof_verbose;  if myenv.verbose;
30  fprintf('\nrunning main program on sample data sets\n')  fprintf('\nrunning main program on sample data sets\n')
31  fprintf('========================================\n\n')  fprintf('========================================\n\n')
32  end;  end;
# Line 31  end; Line 34  end;
34  %select the data source (and specific params) => wod05 sample  %select the data source (and specific params) => wod05 sample
35  dataset=profiles_prep_select('wod05','90CTD');  dataset=profiles_prep_select('wod05','90CTD');
36  %process it  %process it
37  profiles_prep_main;  profiles_prep_main(dataset);
38  %  %
39  fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);  fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
40    
41  %select the data source (and specific params) => argo sample  %select the data source (and specific params) => argo sample
42  dataset=profiles_prep_select('argo','indian');  dataset=profiles_prep_select('argo','indian');
43  %process it  %process it
44  profiles_prep_main;  profiles_prep_main(dataset);
45  %  %
46  fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);  fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
47    
48    %select the data source (and specific params) => odv sample
49    dataset=profiles_prep_select('odv','ODVcompact_sample');
50    %process it
51    profiles_prep_main(dataset);
52    %
53    fprintf(['\n\nodv sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
54    
55  fprintf('\n basic MITprof test: completed. \n');  fprintf('\n basic MITprof test: completed. \n');
56    
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