/[MITgcm]/MITgcm_contrib/gael/profilesMatlabProcessing/profiles_process_init.m
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revision 1.2 by gforget, Wed Nov 3 19:59:54 2010 UTC revision 1.11 by gforget, Wed Jun 15 17:07:26 2011 UTC
# Line 1  Line 1 
1    clear all
2    
3  global MITprof_verbose; MITprof_verbose=1;  global MITprof_verbose; %to print notes to screen
4    if isempty(MITprof_verbose); MITprof_verbose=2; end;
5    
6    if MITprof_verbose;
7    fprintf('creating database directory with reference datasets\n');
8    fprintf('===============================\n\n')
9    end;
10    if ~exist('climatology','dir'), status=mkdir('climatology'); end
11    gcmfaces_path;
12    eval(['!ln -s ' gcmfaces_dir 'sample_input/GRIDv4 climatology/']);
13    eval(['!ln -s ' gcmfaces_dir 'sample_input/OCCAetcONv4GRID/* climatology/']);
14    
15    if MITprof_verbose;
16  fprintf('adding directories to your path\n');  fprintf('adding directories to your path\n');
17  fprintf('===============================\n\n')  fprintf('===============================\n\n')
18  mydir=[pwd '/'];  end;
 eval(['addpath ' mydir 'profiles_IO_v2/;']);  
 eval(['addpath ' mydir 'profiles_IO_external/;']);  
 eval(['addpath ' mydir 'profiles_misc/;']);  
 eval(['addpath ' mydir 'profiles_process_main_v2/;']);  
 eval(['addpath ' mydir 'profiles_genericgrid/;']);  
19    
20    global MITprof_dir; MITprof_dir=[pwd '/'];
21    fid=fopen([MITprof_dir 'MITprof_path.m'],'wt');
22    aa=sprintf(['global MITprof_dir; MITprof_dir=''' MITprof_dir ''';\n']);
23    aa=sprintf([aa 'addpath ' MITprof_dir ';\n']);
24    aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_IO_v2/;\n']);
25    aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_IO_external/;\n']);
26    aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_misc/;\n']);
27    aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_process_main_v2/;\n']);
28    aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_stats/;\n']);
29    aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_devel/;\n']);
30    aa=sprintf([aa 'addpath ' MITprof_dir 'climatology/;\n']);
31    eval(aa);
32    fid=fopen([MITprof_dir 'MITprof_path.m'],'wt'); fprintf(fid,aa); fclose(fid);
33    
34            
35    if MITprof_verbose;
36    fprintf('\ngenerating .mat files for reference grid and climatology\n')
37    fprintf('========================================\n\n')
38    end;
39    profiles_prep_load_fields(1);
40    
41    fprintf('\n\n basic MITprof test: started... \n');
42    
43  fprintf('running main program on sample data sets\n')  if MITprof_verbose;
44    fprintf('\nrunning main program on sample data sets\n')
45  fprintf('========================================\n\n')  fprintf('========================================\n\n')
46    end;
 %remove old results:  
 !\rm profiles_samples/wod05_sample/wod05_CTD_1990s.nc;  
 !\rm profiles_samples/argo_sample/argo_indian.nc;  
47    
48  %select the data source (and specific params) => wod05 sample  %select the data source (and specific params) => wod05 sample
49  dataset=profiles_prep_select('wod05','90CTD');  dataset=profiles_prep_select('wod05','90CTD');
50  %process it  %process it
51  profiles_prep_main;  profiles_prep_main(dataset);
52  %  %
53  fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc \n\n']);  fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
54    
55  %select the data source (and specific params) => argo sample  %select the data source (and specific params) => argo sample
56  dataset=profiles_prep_select('argo','indian');  dataset=profiles_prep_select('argo','indian');
57  %process it  %process it
58  profiles_prep_main;  profiles_prep_main(dataset);
59  %  %
60  fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc \n\n']);  fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
61    
62    %select the data source (and specific params) => odv sample
63    dataset=profiles_prep_select('odv','ODVcompact_sample');
64    %process it
65    profiles_prep_main(dataset);
66    %
67    fprintf(['\n\nodv sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
68    
69    fprintf('\n basic MITprof test: completed. \n');
70    
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