/[MITgcm]/MITgcm_contrib/gael/profilesMatlabProcessing/profiles_process_init.m
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revision 1.12 by gforget, Fri Aug 5 22:11:25 2011 UTC revision 1.19 by gforget, Sun Jan 17 16:00:21 2016 UTC
# Line 1  Line 1 
1  clear all  clear all
2    
 global MITprof_verbose; %to print notes to screen  
 if isempty(MITprof_verbose); MITprof_verbose=2; end;  
   
 if MITprof_verbose;  
 fprintf('creating database directory with reference datasets\n');  
 fprintf('===============================\n\n')  
 end;  
 if ~exist('climatology','dir'), status=mkdir('climatology'); end  
3  gcmfaces_global;  gcmfaces_global;
4  eval(['!ln -s ' myenv.gcmfaces_dir 'sample_input/GRIDv4 climatology/']);  myenv.verbose=1;
5  eval(['!ln -s ' myenv.gcmfaces_dir 'sample_input/OCCAetcONv4GRID/* climatology/']);  
6    fprintf('\n\n basic MITprof test: started... \n');
7    
8  if MITprof_verbose;  if myenv.verbose;
9  fprintf('adding directories to your path\n');  fprintf('\nadding directories to your path\n');
10  fprintf('===============================\n\n')  fprintf('===============================\n\n')
11  end;  end;
12    MITprof_global;
13    
14  global MITprof_dir; MITprof_dir=[pwd '/'];  if myenv.verbose;
15  fid=fopen([MITprof_dir 'MITprof_path.m'],'wt');  fprintf('\nloading  reference grid and climatology\n')
 aa=sprintf(['global MITprof_dir; MITprof_dir=''' MITprof_dir ''';\n']);  
 aa=sprintf([aa 'addpath ' MITprof_dir ';\n']);  
 aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_IO_v2/;\n']);  
 aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_IO_external/;\n']);  
 aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_misc/;\n']);  
 aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_process_main_v2/;\n']);  
 aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_stats/;\n']);  
 aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_devel/;\n']);  
 aa=sprintf([aa 'addpath ' MITprof_dir 'climatology/;\n']);  
 eval(aa);  
 fid=fopen([MITprof_dir 'MITprof_path.m'],'wt'); fprintf(fid,aa); fclose(fid);  
   
           
 if MITprof_verbose;  
 fprintf('\ngenerating .mat files for reference grid and climatology\n')  
16  fprintf('========================================\n\n')  fprintf('========================================\n\n')
17  end;  end;
18  profiles_prep_load_fields(1);  profiles_prep_load_fields;
19    
20  fprintf('\n\n basic MITprof test: started... \n');  if myenv.verbose;
   
 if MITprof_verbose;  
21  fprintf('\nrunning main program on sample data sets\n')  fprintf('\nrunning main program on sample data sets\n')
22  fprintf('========================================\n\n')  fprintf('========================================\n\n')
23  end;  end;
# Line 50  dataset=profiles_prep_select('wod05','90 Line 27  dataset=profiles_prep_select('wod05','90
27  %process it  %process it
28  profiles_prep_main(dataset);  profiles_prep_main(dataset);
29  %  %
30  fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);  fil=[dataset.dirOut dataset.fileOut];
31    if ~isempty(dir(fil));
32      fprintf(['\n\n wod05 sample -- done -- ' fil ' was created \n\n']);
33    else;
34      warning(['wod05 sample -- SKIPPED -- ' fil ' was NOT created \n\n']);
35    end;
36    
37  %select the data source (and specific params) => argo sample  %select the data source (and specific params) => argo sample
38  dataset=profiles_prep_select('argo','indian');  dataset=profiles_prep_select('argo','indian');
39  %process it  %process it
40  profiles_prep_main(dataset);  profiles_prep_main(dataset);
41  %  %
42  fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);  fil=[dataset.dirOut dataset.fileOut];
43    if ~isempty(dir(fil));
44      fprintf(['\n\n argo sample -- done -- ' fil ' was created \n\n']);
45    else;
46      warning(['argo sample -- SKIPPED -- ' fil ' was NOT created \n\n']);
47    end;
48    
49  %select the data source (and specific params) => odv sample  %select the data source (and specific params) => odv sample
50  dataset=profiles_prep_select('odv','ODVcompact_sample');  dataset=profiles_prep_select('odv','ODVcompact_sample');
51  %process it  %process it
52  profiles_prep_main(dataset);  profiles_prep_main(dataset);
53  %  %
54  fprintf(['\n\nodv sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);  fil=[dataset.dirOut dataset.fileOut];
55    if ~isempty(dir(fil));
56      fprintf(['\n\n odv sample -- done -- ' fil ' was created \n\n']);
57    else;
58      warning(['odv sample -- SKIPPED -- ' fil ' was NOT created \n\n']);
59    end;
60    
61  fprintf('\n basic MITprof test: completed. \n');  fprintf('\n basic MITprof test: completed. \n');
62    
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